Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BR63_RS14705 Genome accession   NZ_CP045798
Coordinates   2903677..2905029 (+) Length   450 a.a.
NCBI ID   WP_034425129.1    Uniprot ID   A0A7G6E5R4
Organism   Thermanaerosceptrum fracticalcis strain DRI-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2898677..2910029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BR63_RS14685 (BR63_14635) - 2899051..2899512 (+) 462 WP_034425137.1 CtsR family transcriptional regulator -
  BR63_RS14690 (BR63_14640) - 2899525..2900049 (+) 525 WP_034425136.1 UvrB/UvrC motif-containing protein -
  BR63_RS14695 (BR63_14645) - 2900042..2901112 (+) 1071 WP_034425134.1 protein arginine kinase -
  BR63_RS14700 (BR63_14650) - 2901114..2903555 (+) 2442 WP_034425132.1 ATP-dependent Clp protease ATP-binding subunit -
  BR63_RS14705 (BR63_14655) radA 2903677..2905029 (+) 1353 WP_034425129.1 DNA repair protein RadA Machinery gene
  BR63_RS14710 (BR63_14660) - 2905071..2905415 (-) 345 WP_051966179.1 hypothetical protein -
  BR63_RS14715 (BR63_14665) - 2905661..2906137 (+) 477 WP_034425125.1 CarD family transcriptional regulator -
  BR63_RS14720 (BR63_14670) - 2906313..2907434 (+) 1122 WP_034425122.1 PIN/TRAM domain-containing protein -
  BR63_RS14725 (BR63_14675) ispD 2907427..2908119 (+) 693 WP_034425119.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BR63_RS14730 (BR63_14680) ispF 2908120..2908596 (+) 477 WP_034425117.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 48926.67 Da        Isoelectric Point: 7.1158

>NTDB_id=397285 BR63_RS14705 WP_034425129.1 2903677..2905029(+) (radA) [Thermanaerosceptrum fracticalcis strain DRI-13]
MSKQKYKYVCQQCSYEASRWLGKCPECGAWNSLVEETIEKKTVAGIQKNGGVRPEPLAQIKPLGVERLDLGMAEFNRVLG
GGLVPGTVVLLAGDPGIGKSTLLLQSASYAAQKLNKVFYISGEESAQQIKMRAARVGLDNSNLWLWSETDLDAIEAEIRE
SLPSLVIVDSIQTIYSAELNSGPGSVSQIREGTTRLLNLAKTLNIPVIIVGHVTKDGMIAGPRVLEHMVDTVLYFEGERH
YQYRILRAIKNRFGSTFELGVFEMKNEGLTEVTNPSQAFLAERPLFSPGSVVAACMEGSRPLLVEIQALVSQSSFGQPRR
MTTGTDNNRVNLIMAVLEKRVGLNLNFQDAYVNIVGGIKILEPALDLSIALAIASSLKNTPCLSGLAVMGEIGLTGEIRG
VPYVYKRLQEAKKLGFKCCLLPAGNVEEKVSGLELLEVKTVREAIDAALA

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=397285 BR63_RS14705 WP_034425129.1 2903677..2905029(+) (radA) [Thermanaerosceptrum fracticalcis strain DRI-13]
TTGTCTAAACAAAAGTATAAATATGTCTGCCAGCAATGCAGCTACGAAGCTTCCCGCTGGCTGGGAAAATGTCCGGAGTG
TGGTGCCTGGAACAGTTTAGTAGAGGAGACAATAGAAAAAAAGACAGTAGCAGGTATCCAGAAGAATGGAGGAGTACGGC
CCGAACCTCTGGCCCAGATCAAGCCCCTGGGAGTTGAGCGGTTGGACCTGGGAATGGCGGAATTTAACAGGGTTTTAGGA
GGTGGTTTAGTACCTGGCACTGTTGTCCTCCTGGCTGGAGATCCCGGTATAGGCAAGTCTACGCTCCTGTTACAATCTGC
ATCTTATGCAGCACAGAAATTAAATAAGGTATTTTATATCTCCGGGGAAGAATCAGCCCAACAAATTAAAATGCGGGCAG
CCCGGGTGGGTCTGGATAATAGTAATCTCTGGCTGTGGTCGGAAACTGACCTGGATGCCATTGAGGCGGAAATAAGAGAG
TCTCTGCCTTCACTGGTTATCGTGGATTCTATCCAGACCATTTATTCCGCGGAACTGAACTCCGGACCAGGCAGTGTCAG
CCAGATTAGAGAAGGTACAACCCGCCTTTTGAACCTTGCCAAGACCCTTAATATCCCTGTAATCATTGTAGGACACGTGA
CAAAGGATGGTATGATTGCTGGACCCCGTGTTTTAGAACATATGGTAGATACGGTTTTATATTTTGAAGGAGAACGCCAT
TACCAGTACAGGATTCTCCGGGCCATTAAAAACCGTTTTGGTTCTACTTTTGAACTTGGTGTCTTTGAGATGAAAAATGA
GGGTTTAACAGAAGTAACCAACCCATCTCAGGCTTTTTTAGCGGAAAGGCCACTCTTTTCCCCCGGTTCAGTGGTAGCTG
CTTGTATGGAAGGGTCAAGACCGCTTTTAGTGGAAATACAGGCTTTAGTGAGCCAGAGTTCCTTTGGCCAGCCCAGGCGG
ATGACCACAGGGACCGATAACAATCGCGTAAATCTAATCATGGCTGTTTTGGAAAAACGAGTAGGCCTCAACCTAAACTT
TCAAGATGCTTACGTCAACATTGTGGGGGGGATTAAAATTTTAGAGCCTGCCCTGGATTTATCTATAGCCCTGGCCATTG
CTTCCAGTTTAAAAAATACTCCCTGTTTGTCGGGTTTAGCCGTTATGGGAGAAATAGGCTTAACGGGAGAGATAAGAGGG
GTTCCTTATGTTTATAAGCGCTTACAGGAGGCAAAGAAACTGGGCTTTAAATGCTGCCTTCTTCCGGCGGGTAACGTAGA
GGAGAAAGTGTCAGGCTTAGAATTGCTGGAAGTAAAAACAGTGAGAGAGGCCATTGACGCGGCTTTGGCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(56-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(342-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G6E5R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.315

100

0.567
  radA Streptococcus mitis SK321

51.198

100

0.522
  radA Streptococcus pneumoniae Rx1

50.98

100

0.52
  radA Streptococcus pneumoniae D39

50.98

100

0.52
  radA Streptococcus pneumoniae R6

50.98

100

0.52
  radA Streptococcus pneumoniae TIGR4

50.98

100

0.52
  radA Streptococcus mitis NCTC 12261

50.763

100

0.518

Multiple sequence alignment