Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GH799_RS06095 Genome accession   NZ_CP045794
Coordinates   1196949..1197467 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus 10329     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1191949..1202467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH799_RS06085 (GH799_06080) gshA 1194684..1196252 (+) 1569 WP_005493959.1 glutamate--cysteine ligase -
  GH799_RS06090 (GH799_06085) - 1196277..1196882 (+) 606 WP_015297256.1 hypothetical protein -
  GH799_RS06095 (GH799_06090) luxS 1196949..1197467 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  GH799_RS06100 (GH799_06095) - 1197529..1198809 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  GH799_RS06105 (GH799_06100) - 1198935..1199729 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  GH799_RS06110 (GH799_06105) ffh 1199942..1201324 (+) 1383 WP_005462555.1 signal recognition particle protein -
  GH799_RS06115 (GH799_06110) rpsP 1201534..1201782 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  GH799_RS06120 (GH799_06115) rimM 1201811..1202359 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=397246 GH799_RS06095 WP_005462534.1 1196949..1197467(+) (luxS) [Vibrio parahaemolyticus 10329]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=397246 GH799_RS06095 WP_005462534.1 1196949..1197467(+) (luxS) [Vibrio parahaemolyticus 10329]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment