Detailed information NTG0397243

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GH799_RS05965
• Genome accession: NZ_CP045794
• Coordinates: 1174363..1175352 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus 10329
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1169363..1180352

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GH799_RS05930 (GH799_05925)	ftsB	1169371..1169652 (+)	282	WP_005455577.1	cell division protein FtsB	-
GH799_RS05935 (GH799_05930)	ispD	1169654..1170358 (+)	705	WP_005493934.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GH799_RS05940 (GH799_05935)	ispF	1170376..1170852 (+)	477	WP_005493937.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GH799_RS05945 (GH799_05940)	truD	1170899..1171942 (+)	1044	WP_005493940.1	tRNA pseudouridine(13) synthase TruD	-
GH799_RS05950 (GH799_05945)	surE	1171942..1172718 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
GH799_RS05955 (GH799_05950)	-	1172718..1173344 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GH799_RS05960 (GH799_05955)	-	1173359..1174282 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GH799_RS05965 (GH799_05960)	rpoS	1174363..1175352 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GH799_RS05970 (GH799_05965)	mutS	1175432..1177993 (-)	2562	WP_005493944.1	DNA mismatch repair protein MutS	-
GH799_RS05975 (GH799_05970)	pncC	1178078..1178560 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
GH799_RS05980 (GH799_05975)	recA	1178761..1179804 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=397243 GH799_RS05965 WP_005478537.1 1174363..1175352(+) (rpoS) [Vibrio parahaemolyticus 10329]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=397243 GH799_RS05965 WP_005478537.1 1174363..1175352(+) (rpoS) [Vibrio parahaemolyticus 10329]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGTAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACACTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851