Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | GH799_RS04820 | Genome accession | NZ_CP045794 |
| Coordinates | 955195..955710 (+) | Length | 171 a.a. |
| NCBI ID | WP_005454781.1 | Uniprot ID | A0A646LMN6 |
| Organism | Vibrio parahaemolyticus 10329 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 950195..960710
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GH799_RS04800 (GH799_04795) | - | 950328..952898 (-) | 2571 | WP_005496567.1 | PBP1A family penicillin-binding protein | - |
| GH799_RS04805 (GH799_04800) | pilM | 953041..954057 (+) | 1017 | WP_005496568.1 | type IV pilus assembly protein PilM | Machinery gene |
| GH799_RS04810 (GH799_04805) | pilN | 954041..954619 (+) | 579 | WP_005496569.1 | PilN domain-containing protein | Machinery gene |
| GH799_RS04815 (GH799_04810) | pilO | 954612..955205 (+) | 594 | WP_005496571.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GH799_RS04820 (GH799_04815) | pilP | 955195..955710 (+) | 516 | WP_005454781.1 | pilus assembly protein PilP | Machinery gene |
| GH799_RS04825 (GH799_04820) | pilQ | 955742..957490 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| GH799_RS04830 (GH799_04825) | aroK | 957679..958197 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| GH799_RS04835 (GH799_04830) | aroB | 958229..959329 (+) | 1101 | WP_005496576.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18844.96 Da Isoelectric Point: 10.4351
>NTDB_id=397236 GH799_RS04820 WP_005454781.1 955195..955710(+) (pilP) [Vibrio parahaemolyticus 10329]
MGNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPSDKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
MGNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPSDKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=397236 GH799_RS04820 WP_005454781.1 955195..955710(+) (pilP) [Vibrio parahaemolyticus 10329]
ATGGGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTAGGCGAGATGTGGAGAAGCTCAAACCTTCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGGGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTAGGCGAGATGTGGAGAAGCTCAAACCTTCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
83.041 |
100 |
0.83 |
| pilP | Vibrio cholerae strain A1552 |
58.14 |
100 |
0.585 |