Detailed information NTG0397224

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GH799_RS01425
• Genome accession: NZ_CP045794
• Coordinates: 294758..295804 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus 10329
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 289758..300804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GH799_RS01400 (GH799_01400)	rplC	290331..290960 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
GH799_RS01405 (GH799_01405)	rpsJ	290975..291286 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
GH799_RS01410 (GH799_01410)	rpmE	291744..291965 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
GH799_RS01420 (GH799_01420)	priA	292260..294464 (+)	2205	WP_005496931.1	primosomal protein N'	-
GH799_RS01425 (GH799_01425)	cytR	294758..295804 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
GH799_RS01430 (GH799_01430)	ftsN	295980..296525 (+)	546	WP_005496929.1	cell division protein FtsN	-
GH799_RS01435 (GH799_01435)	hslV	296689..297240 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
GH799_RS01440 (GH799_01440)	hslU	297264..298595 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
GH799_RS01445 (GH799_01445)	-	298780..299697 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GH799_RS01450 (GH799_01450)	rraA	299774..300286 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
GH799_RS01455 (GH799_01455)	zapB	300391..300633 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=397224 GH799_RS01425 WP_254894148.1 294758..295804(+) (cytR) [Vibrio parahaemolyticus 10329]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=397224 GH799_RS01425 WP_254894148.1 294758..295804(+) (cytR) [Vibrio parahaemolyticus 10329]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCAGCTATGGAACATGGCTACCTCGTACTACT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTG
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871