Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HRD51_RS26555 Genome accession   NZ_CP054019
Coordinates   5995513..5996523 (+) Length   336 a.a.
NCBI ID   WP_235094319.1    Uniprot ID   -
Organism   Streptomyces sp. A1-5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5990513..6001523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD51_RS26540 (HRD51_26195) - 5991957..5993579 (+) 1623 WP_235094317.1 ABC transporter substrate-binding protein -
  HRD51_RS26545 (HRD51_26200) - 5993600..5994523 (+) 924 WP_039640894.1 ABC transporter permease -
  HRD51_RS26550 (HRD51_26205) - 5994516..5995499 (+) 984 WP_235094318.1 ABC transporter permease -
  HRD51_RS26555 (HRD51_26210) amiE 5995513..5996523 (+) 1011 WP_235094319.1 ABC transporter ATP-binding protein Regulator
  HRD51_RS26560 (HRD51_26215) - 5996510..5997571 (+) 1062 WP_205366537.1 dipeptide ABC transporter ATP-binding protein -
  HRD51_RS26565 (HRD51_26220) - 5997651..5998799 (-) 1149 WP_235094320.1 dipeptide ABC transporter ATP-binding protein -
  HRD51_RS26570 (HRD51_26225) - 5998812..5999879 (-) 1068 WP_235094321.1 ABC transporter ATP-binding protein -
  HRD51_RS26575 (HRD51_26230) - 5999891..6000862 (-) 972 WP_039633093.1 ABC transporter permease -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 36100.78 Da        Isoelectric Point: 8.4897

>NTDB_id=397224 HRD51_RS26555 WP_235094319.1 5995513..5996523(+) (amiE) [Streptomyces sp. A1-5]
MTNGGAPPAQPLLDVQDLAVEFRTRDGVAKAVNGVSYTVAAGQTLAVLGESGSGKSVTAQAVMGILDSPPGFVTGGRILF
QGRDLLTLGKEERRRIRGAKMAMIFQDALSALNPVLSVGTQLGEMFQVHTGTSRKEARAKAVELMERVGIPAARARVGDY
PHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELRREYRMGLILITHDLGVVADVADTIAVMYAG
RVVETAPVHQLYKAPAHPYTRGLLESVPRLGHKGRELHAIKGLPPNLTAIPPGCAFHPRCPLARDVCHTDRPPLYDVGPG
RTSACHFWKETLDGAR

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=397224 HRD51_RS26555 WP_235094319.1 5995513..5996523(+) (amiE) [Streptomyces sp. A1-5]
ATGACCAACGGCGGCGCGCCCCCGGCGCAGCCCCTGCTCGACGTCCAGGACCTGGCGGTGGAGTTCCGCACCCGGGACGG
GGTGGCCAAGGCCGTCAACGGCGTCAGCTACACCGTGGCCGCCGGCCAGACGCTGGCGGTGCTCGGCGAGTCCGGCTCCG
GCAAGTCCGTCACCGCGCAGGCCGTGATGGGCATCCTCGACTCCCCACCGGGCTTCGTCACCGGCGGCCGGATCCTCTTC
CAGGGGCGCGATCTGCTCACCCTGGGCAAGGAGGAGCGCCGCAGGATCCGCGGCGCGAAGATGGCGATGATCTTCCAGGA
CGCGCTCTCCGCGCTGAACCCGGTGCTCAGCGTCGGCACCCAACTCGGCGAGATGTTCCAGGTGCACACCGGGACGTCCC
GCAAGGAAGCCCGGGCCAAGGCCGTCGAGCTGATGGAGCGGGTCGGCATCCCGGCGGCCCGGGCGCGGGTGGGGGACTAT
CCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCATGGCGCTCGCCCTGGAACCCGACCTGATCATCGC
CGACGAGCCGACCACCGCCCTGGACGTCACGGTCCAGGCCCAGGTCATGGACCTGCTCGCCGAGTTGCGCCGGGAATACC
GGATGGGCCTGATCCTGATCACCCACGACCTGGGCGTGGTCGCCGACGTCGCCGACACCATCGCCGTGATGTACGCGGGC
CGGGTCGTCGAGACCGCCCCGGTGCACCAGCTCTACAAGGCGCCCGCGCACCCGTACACCCGCGGCTTGCTGGAGTCCGT
CCCCCGCCTGGGGCACAAGGGCCGGGAACTGCACGCGATCAAGGGCCTGCCGCCGAACCTCACCGCCATCCCGCCGGGCT
GCGCCTTCCACCCCCGCTGCCCGCTGGCCCGCGACGTCTGCCACACCGACCGCCCGCCGCTCTACGACGTCGGGCCGGGC
CGGACCAGCGCCTGCCACTTCTGGAAGGAGACGCTCGATGGCGCCCGGTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(243-307)

ABC transporter (ABC_tran)

(33-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.584

95.833

0.446
  amiE Streptococcus thermophilus LMG 18311

45.963

95.833

0.44
  amiE Streptococcus thermophilus LMD-9

45.963

95.833

0.44
  oppD Streptococcus mutans UA159

45.57

94.048

0.429

Multiple sequence alignment