Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HRD51_RS23810 Genome accession   NZ_CP054019
Coordinates   5308605..5310506 (+) Length   633 a.a.
NCBI ID   WP_205370452.1    Uniprot ID   -
Organism   Streptomyces sp. A1-5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5303605..5315506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD51_RS23790 (HRD51_23460) - 5304135..5304836 (-) 702 WP_205366190.1 DUF2993 domain-containing protein -
  HRD51_RS23795 (HRD51_23465) - 5305043..5306326 (-) 1284 WP_235094055.1 hypothetical protein -
  HRD51_RS23800 (HRD51_23470) - 5306337..5306582 (-) 246 WP_275695811.1 MoaD/ThiS family protein -
  HRD51_RS23805 (HRD51_23475) rcrP 5306771..5308504 (+) 1734 WP_235094057.1 ABC transporter ATP-binding protein Regulator
  HRD51_RS23810 (HRD51_23480) rcrQ 5308605..5310506 (+) 1902 WP_205370452.1 ABC transporter ATP-binding protein Regulator
  HRD51_RS23815 (HRD51_23485) - 5311381..5312223 (+) 843 WP_205366193.1 response regulator transcription factor -
  HRD51_RS23820 (HRD51_23490) - 5312248..5313273 (+) 1026 WP_067348143.1 LacI family DNA-binding transcriptional regulator -
  HRD51_RS23825 (HRD51_23495) - 5313390..5314508 (+) 1119 WP_205366194.1 trypsin-like peptidase domain-containing protein -
  HRD51_RS23830 (HRD51_23500) - 5314660..5315400 (+) 741 WP_205366195.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 633 a.a.        Molecular weight: 68322.78 Da        Isoelectric Point: 6.3642

>NTDB_id=397219 HRD51_RS23810 WP_205370452.1 5308605..5310506(+) (rcrQ) [Streptomyces sp. A1-5]
MMGGPIDKSLNFKGSGKRLLAQMRPERGLITVALLLGVLSVALTVVGPKVLGRATDLIMAGIVGRDLPAGLTKEQAADLL
RAHGQGGLADLVASMPVAPGPHTDFGAVGMVLLFVALIYVGSSVFGFVQARIATRVVQRTVFRMREQVEEKLARLPLSYF
DKQQRGEVLSRATNDIDNIQQTLQQTLSQIVASLLTIVGVLGMMFWISWLLALVALVTVPVSVVVATKVGKRAQPQFVQQ
WKTTGKLNAHIEEMYTGHSLVKVFGREKESAALFREQNDALYSAGFKAQFISGIIQPAMMFIGNLNYVLVAVVGGLRVAS
GALSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERVFELLDAAEQHPDAERPARPEQVTGRVAFEGVSFRYDEN
KPLIEDLSLSVRPGQTVAIVGPTGAGKTTLVNLLMRFYEVRDGRIVLDGVDIAEMSREELRGHIGMVLQDTWLFGGTIAE
NIAYGAPEGTSRDKVVEAARATHVDRFVRTLPDGYDTVIDEEGANVSVGEKQLITIARAFLAEPAILVLDEATSSVDTRT
EVLIQHAMAQLRSGRTSFVIAHRLSTIRDADLILVMENGSIVEQGTHGTLLSADGAYARLYAAQFAEAVTEAG

Nucleotide


Download         Length: 1902 bp        

>NTDB_id=397219 HRD51_RS23810 WP_205370452.1 5308605..5310506(+) (rcrQ) [Streptomyces sp. A1-5]
ATGATGGGCGGCCCGATCGACAAGTCCCTGAACTTCAAGGGCTCCGGCAAGCGGCTGCTGGCCCAGATGCGGCCGGAGCG
CGGCCTCATCACGGTCGCGCTGCTGCTCGGCGTGCTCAGCGTGGCGCTGACCGTCGTCGGCCCCAAGGTGCTGGGCCGGG
CCACCGACCTGATCATGGCCGGCATCGTCGGCCGCGACCTGCCCGCGGGACTGACCAAGGAGCAGGCCGCCGACCTGCTG
CGGGCGCACGGCCAGGGCGGGCTCGCGGACCTGGTCGCCAGCATGCCGGTGGCCCCCGGCCCGCACACCGACTTCGGCGC
GGTGGGCATGGTCCTGCTCTTCGTCGCGCTGATCTACGTCGGCTCCTCCGTCTTCGGCTTCGTCCAGGCCCGGATCGCCA
CCCGCGTCGTGCAGCGCACCGTCTTCCGGATGCGCGAGCAGGTCGAGGAGAAGCTCGCCCGGCTGCCGCTGAGCTACTTC
GACAAGCAGCAGCGCGGCGAGGTGCTCTCCCGCGCCACCAACGACATCGACAACATCCAGCAGACGCTCCAGCAGACCCT
CAGCCAGATAGTGGCCTCGCTGCTGACGATCGTGGGCGTGCTGGGCATGATGTTCTGGATCTCCTGGCTGCTGGCCCTGG
TCGCCCTGGTCACGGTCCCGGTCTCGGTCGTCGTCGCCACCAAGGTCGGCAAGCGCGCCCAGCCGCAGTTCGTCCAGCAG
TGGAAGACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACTCCCTGGTCAAGGTCTTCGGCCGGGA
GAAGGAGTCCGCCGCGCTGTTCCGCGAGCAGAACGACGCGCTCTACTCCGCGGGCTTCAAGGCCCAGTTCATCTCCGGCA
TCATCCAGCCCGCGATGATGTTCATCGGCAACCTCAACTACGTCCTGGTGGCCGTGGTCGGCGGTCTGCGCGTCGCCTCC
GGCGCCCTGTCCATCGGCGACGTCCAGGCGTTCATCCAGTACAGCCGCCAGTTCAGCCAGCCGTTGACCCAGGTCGCCTC
GATGGCCAACCTCGTCCAGTCCGGCGTGGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCGCGGAGCAGCACCCCG
ACGCCGAGCGGCCCGCCCGCCCGGAGCAGGTCACCGGCCGGGTCGCCTTCGAGGGCGTCTCCTTCCGCTACGACGAGAAC
AAGCCGCTCATCGAGGACCTCTCGCTGTCCGTCCGCCCCGGCCAGACCGTCGCCATCGTCGGCCCGACCGGCGCCGGCAA
GACCACCCTGGTCAACCTCCTGATGCGGTTCTACGAGGTCCGCGACGGCCGGATCGTCCTCGACGGCGTGGACATCGCGG
AGATGTCCCGCGAGGAGCTGCGCGGCCACATCGGCATGGTCCTGCAGGACACCTGGCTCTTCGGCGGCACCATCGCCGAG
AACATCGCCTACGGCGCCCCCGAGGGGACCTCCCGCGACAAGGTCGTCGAGGCCGCCAGGGCCACCCACGTCGACCGCTT
CGTCCGCACCCTCCCCGACGGCTACGACACCGTCATCGACGAGGAGGGCGCCAACGTCTCGGTGGGCGAGAAGCAGCTCA
TCACCATCGCCCGGGCCTTCCTCGCCGAGCCGGCCATCCTCGTCCTGGACGAGGCCACCAGCTCGGTCGACACCCGCACC
GAGGTGCTGATCCAGCACGCCATGGCCCAACTCCGCAGCGGCCGCACCAGCTTCGTCATCGCGCACCGCCTCTCCACCAT
CCGGGACGCCGACCTCATCCTGGTGATGGAGAACGGCTCGATCGTCGAGCAGGGCACCCACGGCACCCTGTTGTCCGCGG
ACGGTGCCTACGCCCGCCTGTACGCGGCCCAGTTCGCGGAGGCCGTGACGGAGGCGGGGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(31-342)

ABC transporter (ABC_tran)

(405-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.167

97.472

0.401

Multiple sequence alignment