Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HRD51_RS23805 Genome accession   NZ_CP054019
Coordinates   5306771..5308504 (+) Length   577 a.a.
NCBI ID   WP_235094057.1    Uniprot ID   -
Organism   Streptomyces sp. A1-5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5301771..5313504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD51_RS23775 (HRD51_23445) - 5301963..5302262 (-) 300 WP_205366188.1 DUF3099 domain-containing protein -
  HRD51_RS23780 (HRD51_23450) - 5302429..5302716 (-) 288 WP_205366189.1 DUF1416 domain-containing protein -
  HRD51_RS23785 (HRD51_23455) - 5302761..5303606 (-) 846 WP_073448416.1 sulfurtransferase -
  HRD51_RS23790 (HRD51_23460) - 5304135..5304836 (-) 702 WP_205366190.1 DUF2993 domain-containing protein -
  HRD51_RS23795 (HRD51_23465) - 5305043..5306326 (-) 1284 WP_235094055.1 hypothetical protein -
  HRD51_RS23800 (HRD51_23470) - 5306337..5306582 (-) 246 WP_275695811.1 MoaD/ThiS family protein -
  HRD51_RS23805 (HRD51_23475) rcrP 5306771..5308504 (+) 1734 WP_235094057.1 ABC transporter ATP-binding protein Regulator
  HRD51_RS23810 (HRD51_23480) rcrQ 5308605..5310506 (+) 1902 WP_205370452.1 ABC transporter ATP-binding protein Regulator
  HRD51_RS23815 (HRD51_23485) - 5311381..5312223 (+) 843 WP_205366193.1 response regulator transcription factor -
  HRD51_RS23820 (HRD51_23490) - 5312248..5313273 (+) 1026 WP_067348143.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62849.37 Da        Isoelectric Point: 7.2952

>NTDB_id=397218 HRD51_RS23805 WP_235094057.1 5306771..5308504(+) (rcrP) [Streptomyces sp. A1-5]
MLVRLARAHLRPYRRSISLIVLLQLIQTLATLYLPTLNADIIDNGVVAGDTGYIFRTGGFMIAVTVLQIACAIGAVYFGA
RTAMALGRDIRAAVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIAMALNQDVPLSAL
LLVIVPVLGILVSLIVRRMRPLFRGVQERIDTVNRVLREQIAGIRVIRAFVRDRYERERFAGANTDLYDISIRAGRLMSM
MFPLVMLIVNLSSVAVVWFGGLRIDAKEMEIGALTAFLSYLMYILMSIMMATFMVMMLPRAEVCAERIQEVLATESSVTP
PAAPVSTLRRHGELELRDVEFRFPGAEQPVLKDISLIARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGTVLVDGEDVR
TLAPETLAAVIGLVPQKPYLFSGTVASNLRYGNPDATDDELWHALETAQARDFVARMEGGLDAPIAQGGTNVSGGQRQRL
AIARALVRKPEIYLFDDSFSALDYATDAALRAALARETDRATVVIVAQRVSTIRGADRIVVLDEGRIVGTGTHGELMAGN
ETYREIVLSQLTEQEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=397218 HRD51_RS23805 WP_235094057.1 5306771..5308504(+) (rcrP) [Streptomyces sp. A1-5]
GTGTTGGTCCGACTCGCGCGGGCGCATCTGCGGCCCTACAGGCGCTCCATATCCCTGATCGTCCTGCTCCAGCTGATACA
GACGCTGGCCACGCTCTATCTGCCGACCCTCAACGCCGACATCATCGACAACGGTGTCGTGGCGGGCGACACGGGCTACA
TCTTCCGCACCGGCGGCTTCATGATCGCGGTGACGGTGCTCCAGATCGCCTGCGCGATCGGCGCGGTGTACTTCGGCGCC
CGCACGGCCATGGCGCTGGGCCGGGACATCCGGGCCGCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCCCGGGAGGTGGG
ACGCTTCGGCGCGCCGTCGCTGATCACCCGCACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTTCTGATGACGTTCA
CGATGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCAACCAGGACGTGCCGCTGTCGGCGCTC
CTCCTGGTCATCGTCCCGGTCCTCGGGATCCTCGTCTCACTGATCGTGCGCCGGATGCGTCCGCTGTTCCGCGGTGTGCA
GGAGCGCATCGACACCGTCAACCGCGTGCTGCGCGAGCAGATCGCCGGCATCCGCGTCATCCGCGCCTTCGTCCGCGACC
GGTACGAGCGCGAGCGGTTCGCCGGGGCCAACACCGATCTCTACGACATCTCGATCCGCGCCGGCCGGCTGATGTCGATG
ATGTTCCCGCTGGTCATGCTGATCGTGAACCTCTCCAGCGTGGCCGTGGTCTGGTTCGGCGGGCTGCGCATCGACGCCAA
GGAGATGGAGATCGGGGCGCTGACGGCCTTCCTCAGCTACCTGATGTACATCCTGATGTCGATCATGATGGCGACGTTCA
TGGTGATGATGCTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGCGACCGAGTCCAGCGTCACCCCG
CCCGCCGCCCCGGTCAGCACCCTGCGCCGGCACGGCGAACTGGAGCTCCGGGACGTCGAGTTCCGCTTCCCCGGCGCCGA
GCAGCCGGTCCTGAAGGACATCTCCCTGATCGCCCGCCCCGGCGAGACCACCGCCGTCATCGGCTCCACCGGCTCCGGCA
AGTCCACCCTCCTCGGGCTGGTGCCCCGGCTCTTCGACGCCACCGGCGGCACGGTCCTGGTCGACGGCGAGGACGTGCGC
ACCCTGGCCCCGGAGACGCTGGCCGCCGTGATCGGCCTGGTGCCGCAGAAGCCGTACCTCTTCTCCGGCACGGTCGCCAG
CAACCTGCGGTACGGCAACCCGGACGCCACCGACGACGAGCTGTGGCACGCCCTGGAGACCGCGCAGGCCCGGGACTTCG
TCGCGCGGATGGAGGGCGGCCTGGACGCGCCGATCGCGCAAGGGGGCACCAACGTCTCCGGCGGTCAGCGGCAGCGCCTG
GCGATCGCCCGCGCCCTGGTCCGCAAGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCCACCGA
CGCGGCCCTGCGCGCCGCACTGGCCCGGGAGACCGACCGGGCCACCGTGGTGATCGTCGCCCAGCGGGTCTCGACGATCC
GCGGCGCCGACCGGATCGTGGTCCTGGACGAGGGCCGGATCGTGGGCACCGGCACCCACGGCGAGTTGATGGCAGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGCAGGAGGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-287)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.357

97.054

0.392