Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   HRD51_RS18340 Genome accession   NZ_CP054019
Coordinates   4139680..4140681 (-) Length   333 a.a.
NCBI ID   WP_205365479.1    Uniprot ID   -
Organism   Streptomyces sp. A1-5     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4134680..4145681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD51_RS18325 (HRD51_18065) - 4135355..4137452 (-) 2098 Protein_3621 fructose-specific PTS transporter subunit EIIC -
  HRD51_RS18330 (HRD51_18070) pfkB 4137445..4138458 (-) 1014 WP_235096021.1 1-phosphofructokinase -
  HRD51_RS18335 (HRD51_18075) - 4138592..4139362 (-) 771 WP_235096022.1 DeoR/GlpR family DNA-binding transcription regulator -
  HRD51_RS18340 (HRD51_18080) rpoS 4139680..4140681 (-) 1002 WP_205365479.1 sigma-70 family RNA polymerase sigma factor Regulator
  HRD51_RS18345 (HRD51_18085) - 4140868..4141386 (+) 519 WP_235093570.1 GNAT family N-acetyltransferase -
  HRD51_RS18350 (HRD51_18090) - 4141524..4142096 (+) 573 WP_235093571.1 hypothetical protein -
  HRD51_RS18355 (HRD51_18095) - 4142218..4142739 (-) 522 WP_235096023.1 pyridoxamine 5'-phosphate oxidase family protein -
  HRD51_RS18360 (HRD51_18100) - 4143068..4144120 (+) 1053 WP_205365483.1 questin oxidase family protein -
  HRD51_RS18365 (HRD51_18105) - 4144450..4144947 (+) 498 WP_039635569.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36772.18 Da        Isoelectric Point: 4.7970

>NTDB_id=397209 HRD51_RS18340 WP_205365479.1 4139680..4140681(-) (rpoS) [Streptomyces sp. A1-5]
MATRAVARRQASTTGSGVANSVRAAGGDIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAQQILDGELTDGNAA
GANRAELEALAAEGDRAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPEEVAGELGSTASRVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAASPEQSVLTLLRSEELEDLIDRLDQRTASIIKARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLEL
KRMARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=397209 HRD51_RS18340 WP_205365479.1 4139680..4140681(-) (rpoS) [Streptomyces sp. A1-5]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGGCCAGCACCACCGGCTCTGGCGTGGCCAACAGCGTTCGCGCAGCAGGCGG
AGACATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATTGCGCGCACGCCGCTGCTCGACGCCGCCAAGGAGG
TGGAGCTGTCCCAGACGATCGAGGCGGGTGTCTACGCCCAGCAGATCCTGGACGGCGAGCTCACCGACGGCAACGCCGCC
GGCGCCAACCGTGCGGAGCTCGAAGCGCTGGCCGCCGAGGGCGACCGGGCCAAGGACGTCTTCATCCGGTCCAACCTCCG
CCTGGTCGTCGCCGTGGCCCGTCGCTACCCGCGCTCCGGCCTCCCCCTGCTGGATCTGATCCAGGAGGGCAACGCCGGCC
TGGTGCGCGCCGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACGTACGCGACGTGGTGGATCCGCCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCGCGCACGATCCGGCTCCCCGTCCACCTCGTCGAGGAGCTCGGCCGGATCCGCCG
GGTGCAGCGCGAGTTCAACCGCGAGAACGGCCGCGACCCGGAGCCGGAGGAGGTCGCCGGCGAGCTGGGTTCCACCGCCT
CCCGGGTCACCGACGTCCTGGACTGGGCCCGCGACCCGGTCAGTCTGAACATGTCGGTGGACGACGACGGCGACACCCAG
TTCGGCGACCTGCTGGAGGACACCTCCGCCGCCTCGCCCGAGCAGTCCGTGCTCACGCTGCTGCGCAGCGAGGAGTTGGA
GGACCTGATCGACCGCCTCGACCAGCGCACCGCCTCGATCATCAAGGCGCGCTACGGCATCGAGGACGGCCGCGAGCGCA
CGCTGACGGAGGTCGGCAAGCAGCACGGCCTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGTTG
AAGCGGATGGCGCGCGACACCGGGTTCGACGCGGCGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70, region 4 (Sigma70_r4)

(270-321)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70 region 2 (Sigma70_r2)

(101-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.867

90.39

0.36

Multiple sequence alignment