Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   GH774_RS01395 Genome accession   NZ_CP045789
Coordinates   252555..252992 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain CFSAN032806     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 247555..257992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH774_RS01375 (GH774_01375) - 248053..249513 (+) 1461 WP_250540164.1 DUF4118 domain-containing protein -
  GH774_RS09770 - 249721..249867 (+) 147 WP_224168554.1 hypothetical protein -
  GH774_RS01380 (GH774_01380) uvrB 249969..251942 (-) 1974 WP_038816456.1 excinuclease ABC subunit UvrB -
  GH774_RS01385 (GH774_01385) - 252096..252326 (+) 231 WP_002852327.1 hypothetical protein -
  GH774_RS01390 (GH774_01390) - 252316..252558 (+) 243 WP_002854947.1 hypothetical protein -
  GH774_RS01395 (GH774_01395) Cj0683 252555..252992 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  GH774_RS01400 (GH774_01400) priA 252974..254827 (+) 1854 WP_002866530.1 primosomal protein N' -
  GH774_RS01405 (GH774_01405) cipA 254837..256231 (-) 1395 WP_002874888.1 DUF2972 domain-containing protein -
  GH774_RS01410 (GH774_01410) ispG 256377..257450 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=397176 GH774_RS01395 WP_002852324.1 252555..252992(+) (Cj0683) [Campylobacter jejuni strain CFSAN032806]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=397176 GH774_RS01395 WP_002852324.1 252555..252992(+) (Cj0683) [Campylobacter jejuni strain CFSAN032806]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment