Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FOC63_RS08360 Genome accession   NZ_CP054015
Coordinates   1652749..1654956 (+) Length   735 a.a.
NCBI ID   WP_009853928.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1647749..1659956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS08335 (FOC63_08335) miaA 1648088..1648975 (+) 888 WP_009853924.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  FOC63_RS08340 (FOC63_08340) hflX 1649114..1650352 (+) 1239 WP_003064155.1 GTPase HflX -
  FOC63_RS08345 (FOC63_08345) - 1650345..1650983 (+) 639 WP_009853925.1 cystathionine beta-lyase -
  FOC63_RS08350 (FOC63_08350) rnz 1651023..1651952 (+) 930 WP_009853926.1 ribonuclease Z -
  FOC63_RS08355 (FOC63_08355) - 1651949..1652707 (+) 759 WP_009853927.1 SDR family NAD(P)-dependent oxidoreductase -
  FOC63_RS08360 (FOC63_08360) recJ 1652749..1654956 (+) 2208 WP_009853928.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FOC63_RS08365 (FOC63_08365) - 1655123..1656388 (+) 1266 WP_009853929.1 DUF4352 domain-containing protein -
  FOC63_RS08370 (FOC63_08370) - 1656587..1656832 (+) 246 WP_009853930.1 hypothetical protein -
  FOC63_RS08375 (FOC63_08375) - 1656923..1658272 (-) 1350 WP_009853931.1 hypothetical protein -
  FOC63_RS08380 (FOC63_08380) - 1658367..1659149 (-) 783 WP_043878544.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 82322.86 Da        Isoelectric Point: 4.3811

>NTDB_id=397158 FOC63_RS08360 WP_009853928.1 1652749..1654956(+) (recJ) [Streptococcus gallolyticus strain FDAARGOS_755]
MITSKYNWKNIEKEPDNGFFELTKKEKLTELASQILYSRGVDTAEKLTQFLSTDLSQLHDPYLLHDMDKAVERIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEILGAEAQVYLPNRFTDGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQ
SQGVDVIVTDHHGLPAELPEAFAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKQTERIGLIELMKVSDVDMGDVNEETVGFKIAPQLNALGRLDDPNPAVELLTGFDDEEAHNIAKMINAKN
EERKEIVQKIFEEAMSMVDLEKPVQVLAKEGWHPGVLGIVAGRILEQIAQPVIVLNIEDGLAKGSARSIEAINIFHALDE
HRGLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEIDLDTVHSLEKLAPFGMDNPKP
VFEIKDFVVKQARTMGQNGAHLKLKIAQGTTAIDLVAFNQGHLAQEFQQAQNLCLATTLSINKWNGQTTVQLMLEDARVE
GVQLIDIRSKTASLPERVPVLAEDSTANEVVVLDIPDKAEELKSLFVGRHFEAVYFKNHIKRAYYLTGYGTRDQFAKLYK
TIYQFPEFDVRYKLKDLSQYLNIPDILLVKMIQIFDELDFVTITDGVMVVNKDAQKRSISESQIYQDLKQQVKFQELMAL
GTPQEIYDWLTDEDD

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=397158 FOC63_RS08360 WP_009853928.1 1652749..1654956(+) (recJ) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGATAACAAGTAAATACAATTGGAAAAATATTGAAAAAGAGCCAGATAATGGCTTTTTTGAGCTGACAAAAAAAGAAAA
ACTAACAGAATTAGCTAGTCAGATTCTTTATAGCCGAGGTGTTGATACGGCAGAAAAATTGACTCAATTTTTATCAACGG
ATTTGTCACAATTGCATGACCCTTACCTTTTACATGACATGGATAAAGCGGTTGAGCGTATTCGCCAAGCCATTGAGAAC
TACGAGCAAATTTTGGTTTATGGTGATTATGATGCTGACGGAATGACTAGTGCCAGTATTATGAAAGAAGCTCTTGAAAT
ATTAGGTGCTGAAGCTCAAGTTTATCTGCCAAATCGCTTCACAGATGGTTATGGTCCCAATGAATCGGTCTATAAATATT
TCATTGAGCAGCAAAACGTTTCTTTGATTATCACGGTGGACAATGGCGTAGCAGGGCACGAAGCGATTGCCTACGCACAA
AGTCAGGGGGTAGATGTCATTGTGACAGACCACCACGGCTTGCCAGCAGAGCTACCAGAAGCATTTGCGATTGTGCACCC
AGAACACCCAGAAGCTGATTATCCGTTCAAATATCTGGCTGGCTGTGGCGTTGCTTTCAAAGTCGCTTGTGCTTTGCTAG
AATCTATTCCGACAGAAATGCTTGATCTGGTGGCAATTGGAACAATTGCTGATATGGTGAGTTTGACTGATGAAAACCGT
ATTATGGTTAAAGTCGGACTTGAAATTCTGAAACAAACCGAACGCATTGGTCTGATTGAATTGATGAAAGTCTCAGACGT
GGATATGGGAGATGTCAATGAAGAAACGGTTGGTTTCAAAATTGCTCCGCAGCTAAATGCACTTGGTCGCCTAGATGACC
CAAATCCTGCTGTCGAATTATTGACTGGCTTTGATGACGAAGAAGCGCATAACATTGCCAAGATGATTAATGCTAAAAAC
GAAGAACGCAAGGAAATTGTTCAGAAAATCTTCGAAGAAGCCATGAGCATGGTTGATTTGGAAAAGCCAGTGCAAGTATT
GGCTAAAGAAGGCTGGCACCCAGGCGTTTTAGGAATTGTCGCAGGGCGTATTTTAGAACAAATCGCGCAGCCAGTGATTG
TTTTAAATATCGAAGATGGGCTTGCTAAAGGTTCAGCTAGAAGTATTGAGGCCATTAATATTTTCCATGCTCTTGATGAG
CACCGTGGCTTATTTGAAGCCTTTGGTGGACATGCTGGTGCTGCTGGAATGACCTTGGTGACTGAAAATCTTGATAAATT
ATCACAAGTTTTGTGTGATTATATTGCTGAAAATGATATTGACTTATCACAGAAAAAAGAGCTTGTTATTGATGAGGTTC
TGGAGCTATCAGAGATTGACCTTGATACCGTGCACAGTCTTGAAAAATTGGCACCATTTGGCATGGACAATCCAAAACCA
GTCTTTGAAATTAAAGATTTTGTGGTGAAACAAGCACGCACTATGGGGCAAAATGGAGCGCATTTAAAATTAAAAATTGC
CCAAGGCACAACGGCAATTGACCTTGTTGCCTTTAATCAAGGACATCTGGCGCAGGAATTTCAACAAGCGCAAAATCTTT
GCCTTGCAACGACCTTATCGATTAATAAGTGGAATGGGCAAACGACTGTTCAATTAATGTTGGAAGATGCGCGTGTTGAG
GGTGTTCAGTTGATTGATATTCGCTCCAAAACAGCTAGCCTTCCAGAACGTGTTCCAGTATTGGCTGAAGATAGCACGGC
AAATGAAGTTGTGGTGTTAGACATTCCTGATAAGGCTGAAGAATTGAAATCACTCTTTGTCGGTCGTCATTTTGAAGCCG
TTTATTTTAAAAATCATATTAAACGTGCTTATTATCTGACAGGCTATGGCACACGTGACCAATTTGCTAAGCTTTATAAA
ACTATCTATCAATTCCCAGAATTTGATGTCCGCTACAAGTTGAAAGATTTGAGTCAATACCTTAATATCCCTGATATTTT
ACTCGTTAAAATGATTCAGATTTTTGATGAATTAGATTTTGTAACCATCACAGATGGTGTTATGGTCGTCAACAAAGATG
CCCAGAAACGCAGTATTTCAGAAAGCCAAATCTACCAAGACCTCAAACAACAAGTTAAATTCCAAGAGCTAATGGCGCTC
GGAACCCCACAAGAAATTTACGATTGGCTGACTGATGAAGATGACTAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-433)

RecJ OB domain (RecJ_OB)

(450-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-730)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.838

100

0.683
  recJ Bacillus subtilis subsp. subtilis str. 168

38.402

100

0.405