Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GH770_RS00895 Genome accession   NZ_CP045784
Coordinates   160121..160750 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella dysenteriae strain CFSAN029786     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 155121..165750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH770_RS00880 (GH770_00880) helD 155363..157417 (-) 2055 WP_005043009.1 DNA helicase IV -
  GH770_RS00885 (GH770_00885) - 157540..157986 (+) 447 WP_001261235.1 YccF domain-containing protein -
  GH770_RS00890 (GH770_00890) yccS 157996..160158 (+) 2163 WP_000875021.1 YccS family putative transporter -
  GH770_RS00895 (GH770_00895) sxy/tfoX 160121..160750 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GH770_RS00900 (GH770_00900) sulA 160969..161478 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GH770_RS00905 (GH770_00905) ompA 161835..162875 (+) 1041 WP_005042889.1 porin OmpA -
  GH770_RS00910 (GH770_00910) matP 162951..163403 (-) 453 WP_000877160.1 macrodomain Ter protein MatP -
  GH770_RS00915 (GH770_00915) - 163589..165349 (+) 1761 WP_000156488.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=397153 GH770_RS00895 WP_000839153.1 160121..160750(-) (sxy/tfoX) [Shigella dysenteriae strain CFSAN029786]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=397153 GH770_RS00895 WP_000839153.1 160121..160750(-) (sxy/tfoX) [Shigella dysenteriae strain CFSAN029786]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCACTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment