Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GFC07_RS23510 Genome accession   NZ_CP045783
Coordinates   4945396..4945992 (+) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain LEMB11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4940396..4950992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFC07_RS23490 (GFC07_23490) - 4940625..4942382 (-) 1758 WP_012968609.1 Lon protease family protein -
  GFC07_RS23495 (GFC07_23495) matP 4942568..4943020 (+) 453 WP_008805891.1 macrodomain Ter protein MatP -
  GFC07_RS23500 (GFC07_23500) ompA 4943131..4944183 (-) 1053 WP_008805892.1 porin OmpA -
  GFC07_RS23505 (GFC07_23505) sulA 4944536..4945045 (-) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  GFC07_RS23510 (GFC07_23510) sxy/tfoX 4945396..4945992 (+) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  GFC07_RS23515 (GFC07_23515) yccS 4946006..4948141 (-) 2136 WP_008805895.1 YccS family putative transporter -
  GFC07_RS23520 (GFC07_23520) - 4948159..4948605 (-) 447 WP_012542294.1 YccF domain-containing protein -
  GFC07_RS23525 (GFC07_23525) helD 4948730..4950784 (+) 2055 WP_016160584.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=397152 GFC07_RS23510 WP_012542296.1 4945396..4945992(+) (sxy/tfoX) [Klebsiella variicola strain LEMB11]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=397152 GFC07_RS23510 WP_012542296.1 4945396..4945992(+) (sxy/tfoX) [Klebsiella variicola strain LEMB11]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCAGGAGCCCGTTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment