Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FOC63_RS06410 Genome accession   NZ_CP054015
Coordinates   1258547..1259155 (-) Length   202 a.a.
NCBI ID   WP_009853556.1    Uniprot ID   A0A139QVJ2
Organism   Streptococcus gallolyticus strain FDAARGOS_755     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1253547..1264155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC63_RS06395 (FOC63_06395) nadE 1253867..1254691 (+) 825 WP_009853553.1 ammonia-dependent NAD(+) synthetase -
  FOC63_RS06400 (FOC63_06400) pepC 1254910..1256247 (+) 1338 WP_009853554.1 aminopeptidase C -
  FOC63_RS06405 (FOC63_06405) pbp1a 1256332..1258560 (-) 2229 WP_009853555.1 penicillin-binding protein PBP1A -
  FOC63_RS06410 (FOC63_06410) recU 1258547..1259155 (-) 609 WP_009853556.1 Holliday junction resolvase RecU Machinery gene
  FOC63_RS06415 (FOC63_06415) - 1259230..1259748 (+) 519 WP_009853557.1 DUF1273 domain-containing protein -
  FOC63_RS06420 (FOC63_06420) gpsB 1259875..1260216 (+) 342 WP_009853558.1 cell division regulator GpsB -
  FOC63_RS06430 (FOC63_06430) - 1260846..1262018 (+) 1173 WP_009853559.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  FOC63_RS06435 (FOC63_06435) - 1262077..1263603 (+) 1527 WP_009853560.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23145.69 Da        Isoelectric Point: 10.1241

>NTDB_id=397135 FOC63_RS06410 WP_009853556.1 1258547..1259155(-) (recU) [Streptococcus gallolyticus strain FDAARGOS_755]
MVNYPHHLIRKQAVPASKKVKKSSVNFANRGMSFEAAINETNNYYLSRNIAVIHKKPTPIQIVKVDYPKRSRAKIVEAYF
RQASTTDYSGVYKGRYIDFEAKETRQKTSMPLKNFHAHQIEHMANVLKQDGICFVLLHFSTLKETYFLPASALVDFYQIN
LGTKSMPLDYIRKNGYVVTTSSLPQVPYLDIIDQKILGGDHN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=397135 FOC63_RS06410 WP_009853556.1 1258547..1259155(-) (recU) [Streptococcus gallolyticus strain FDAARGOS_755]
ATGGTTAATTACCCTCATCATCTTATTCGAAAACAAGCAGTTCCTGCTTCTAAAAAGGTGAAAAAATCATCCGTTAACTT
TGCTAATCGTGGGATGAGTTTTGAGGCAGCAATTAATGAAACCAATAATTATTACTTATCTCGTAATATTGCTGTCATTC
ATAAAAAACCAACACCGATTCAAATTGTTAAAGTTGATTATCCGAAAAGAAGCCGTGCCAAAATTGTAGAAGCCTACTTT
CGACAAGCTTCCACGACCGATTATTCTGGTGTCTATAAAGGGCGCTATATCGACTTTGAAGCCAAAGAAACGCGGCAAAA
GACATCTATGCCATTGAAAAATTTCCACGCTCACCAGATTGAGCACATGGCAAATGTTTTAAAACAAGACGGCATCTGCT
TTGTTCTACTTCATTTTTCGACACTTAAGGAAACTTATTTTCTACCTGCTAGTGCTCTAGTAGATTTTTACCAAATCAAT
CTCGGCACCAAATCCATGCCACTTGATTATATCAGAAAAAATGGTTATGTGGTGACAACAAGTTCACTACCTCAAGTTCC
TTATTTAGATATTATTGATCAAAAAATTTTAGGCGGTGATCACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139QVJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5