Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GH772_RS20665 Genome accession   NZ_CP045777
Coordinates   3689559..3689846 (-) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus paranthracis strain CFSAN068816     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3684559..3694846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH772_RS20645 (GH772_20355) - 3684959..3685819 (+) 861 WP_000064378.1 AraC family transcriptional regulator -
  GH772_RS20650 (GH772_20360) - 3685888..3686751 (+) 864 WP_000615942.1 CdaR family transcriptional regulator -
  GH772_RS20655 (GH772_20365) - 3687018..3688121 (+) 1104 WP_000829433.1 ABC transporter ATP-binding protein -
  GH772_RS20660 (GH772_20370) - 3688334..3689284 (-) 951 WP_001089039.1 serine protease -
  GH772_RS20665 (GH772_20375) abrB 3689559..3689846 (-) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GH772_RS20670 (GH772_20380) - 3689963..3691843 (-) 1881 WP_001026020.1 FtsX-like permease family protein -
  GH772_RS20675 (GH772_20385) nadE 3692115..3692933 (+) 819 WP_000174881.1 ammonia-dependent NAD(+) synthetase -
  GH772_RS20680 (GH772_20390) - 3692982..3693443 (-) 462 WP_000024998.1 NUDIX hydrolase -
  GH772_RS20685 (GH772_20395) - 3693475..3693672 (-) 198 WP_001008785.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=397070 GH772_RS20665 WP_000648330.1 3689559..3689846(-) (abrB) [Bacillus paranthracis strain CFSAN068816]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=397070 GH772_RS20665 WP_000648330.1 3689559..3689846(-) (abrB) [Bacillus paranthracis strain CFSAN068816]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment