Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | DESPR_RS16345 | Genome accession | NC_014972 |
| Coordinates | 3743798..3745165 (+) | Length | 455 a.a. |
| NCBI ID | WP_015725909.1 | Uniprot ID | A0A7U3YPW8 |
| Organism | Desulfobulbus propionicus DSM 2032 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 3738798..3750165
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DESPR_RS16325 (Despr_3254) | - | 3738850..3739308 (+) | 459 | WP_043770262.1 | phosphatidylglycerophosphatase A | - |
| DESPR_RS16330 (Despr_3255) | - | 3739516..3741450 (-) | 1935 | WP_015725906.1 | phosphoenolpyruvate carboxykinase (GTP) | - |
| DESPR_RS16335 (Despr_3256) | pyk | 3741656..3743101 (-) | 1446 | WP_015725907.1 | pyruvate kinase | - |
| DESPR_RS18650 (Despr_3257) | - | 3743155..3743568 (-) | 414 | WP_015725908.1 | hotdog domain-containing protein | - |
| DESPR_RS16345 (Despr_3258) | radA | 3743798..3745165 (+) | 1368 | WP_015725909.1 | DNA repair protein RadA | Machinery gene |
| DESPR_RS16350 (Despr_3259) | - | 3745247..3749371 (-) | 4125 | WP_015725910.1 | DUF4157 domain-containing protein | - |
Sequence
Protein
Download Length: 455 a.a. Molecular weight: 48387.14 Da Isoelectric Point: 6.6458
>NTDB_id=39706 DESPR_RS16345 WP_015725909.1 3743798..3745165(+) (radA) [Desulfobulbus propionicus DSM 2032]
MATPKKDTLLFVCGQCGFESRKWLGRCPDCGAWDSLGEQQKPLVLRPGRKAATAQPLAAAGEEETARLVTSIGEMDRVLG
GGIVPGSLVLIGGDPGIGKSTLILQLLSSLAAKGLKVLYVTGEESVRQIRMRANRLNIEDPAISVSTENCVEAIVDLAGT
MQPALLAVDSIQTVYSEEVGSAPGSVTQVREATARLLALAKSSHLPILLVGHVTKDGAIAGPRVLEHMVDTVLYFEGDRG
QVFRILRTVKNRFGSTNEIGVFEMQESGLVGVDNPSALFLAERPVNVPGSVVLPSVEGTRPILVEVQALVSRSSLGTARR
TAIGADPQRLALLTAVLEKKLGVTLFDHDIFLNIAGGIRIIEPALDLGVVAALLSSFLEKPIDPGTVVCGEVGLAGEVRA
VGQMEMRLREAGRLGFKTFLMPESSTRQLQSKAREGLHLLPVRTVAELADSLFRA
MATPKKDTLLFVCGQCGFESRKWLGRCPDCGAWDSLGEQQKPLVLRPGRKAATAQPLAAAGEEETARLVTSIGEMDRVLG
GGIVPGSLVLIGGDPGIGKSTLILQLLSSLAAKGLKVLYVTGEESVRQIRMRANRLNIEDPAISVSTENCVEAIVDLAGT
MQPALLAVDSIQTVYSEEVGSAPGSVTQVREATARLLALAKSSHLPILLVGHVTKDGAIAGPRVLEHMVDTVLYFEGDRG
QVFRILRTVKNRFGSTNEIGVFEMQESGLVGVDNPSALFLAERPVNVPGSVVLPSVEGTRPILVEVQALVSRSSLGTARR
TAIGADPQRLALLTAVLEKKLGVTLFDHDIFLNIAGGIRIIEPALDLGVVAALLSSFLEKPIDPGTVVCGEVGLAGEVRA
VGQMEMRLREAGRLGFKTFLMPESSTRQLQSKAREGLHLLPVRTVAELADSLFRA
Nucleotide
Download Length: 1368 bp
>NTDB_id=39706 DESPR_RS16345 WP_015725909.1 3743798..3745165(+) (radA) [Desulfobulbus propionicus DSM 2032]
ATGGCCACCCCGAAAAAAGACACCCTGCTCTTCGTCTGCGGCCAGTGCGGTTTTGAAAGCCGCAAATGGCTGGGACGCTG
CCCCGACTGCGGCGCCTGGGACAGCCTGGGCGAACAGCAAAAACCGCTCGTCCTCCGCCCCGGCCGCAAGGCGGCGACAG
CCCAGCCGCTGGCGGCTGCCGGGGAGGAAGAGACCGCCCGCCTGGTGACCAGCATCGGTGAGATGGATCGGGTGCTCGGC
GGCGGCATCGTGCCCGGCTCCCTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACCCTGATCCTGCAGCTGCT
CTCGTCGCTGGCGGCCAAGGGGCTCAAGGTGCTCTACGTCACCGGCGAGGAATCGGTGCGCCAGATCCGCATGCGGGCCA
ACCGCCTCAACATCGAGGATCCGGCGATTTCCGTGTCCACCGAGAACTGCGTCGAGGCCATTGTCGATCTGGCCGGGACC
ATGCAACCGGCCCTGCTGGCGGTGGATTCGATCCAGACGGTGTATAGCGAGGAGGTCGGGTCGGCGCCCGGCTCGGTCAC
CCAGGTGCGCGAGGCCACGGCCAGGCTGCTGGCCCTGGCCAAATCGAGCCATCTGCCGATTCTGCTGGTCGGCCACGTGA
CCAAGGACGGGGCCATCGCCGGTCCGCGGGTACTGGAGCATATGGTCGATACGGTGCTCTATTTCGAAGGGGATCGCGGC
CAGGTGTTCCGTATTCTACGGACGGTGAAGAACCGGTTCGGCTCGACCAACGAGATCGGGGTGTTCGAGATGCAGGAGAG
CGGCTTGGTCGGGGTGGACAACCCCTCGGCCCTGTTCCTCGCCGAGCGGCCGGTCAATGTGCCGGGGTCGGTGGTGTTGC
CCAGCGTCGAGGGCACGCGGCCAATCCTGGTCGAGGTCCAGGCCCTGGTCAGTCGCTCCAGTCTGGGCACGGCCCGGCGT
ACCGCCATCGGCGCCGATCCGCAGCGGCTGGCCCTGCTCACCGCCGTGCTGGAAAAAAAGCTCGGGGTGACGCTGTTTGA
TCACGACATCTTTCTCAACATCGCCGGCGGCATCCGCATCATCGAGCCGGCCCTGGACCTGGGGGTGGTGGCGGCCCTGC
TGTCCAGTTTTCTTGAGAAACCGATCGATCCCGGGACCGTGGTCTGCGGCGAGGTCGGCCTGGCCGGCGAGGTCCGGGCC
GTGGGCCAGATGGAGATGCGGCTGCGCGAGGCCGGCCGGCTTGGCTTCAAGACCTTTCTCATGCCGGAATCCTCGACGCG
CCAACTGCAGTCCAAGGCCAGGGAAGGATTGCACCTCCTGCCGGTGCGGACGGTGGCGGAGTTGGCCGACAGCCTGTTTC
GCGCCTGA
ATGGCCACCCCGAAAAAAGACACCCTGCTCTTCGTCTGCGGCCAGTGCGGTTTTGAAAGCCGCAAATGGCTGGGACGCTG
CCCCGACTGCGGCGCCTGGGACAGCCTGGGCGAACAGCAAAAACCGCTCGTCCTCCGCCCCGGCCGCAAGGCGGCGACAG
CCCAGCCGCTGGCGGCTGCCGGGGAGGAAGAGACCGCCCGCCTGGTGACCAGCATCGGTGAGATGGATCGGGTGCTCGGC
GGCGGCATCGTGCCCGGCTCCCTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACCCTGATCCTGCAGCTGCT
CTCGTCGCTGGCGGCCAAGGGGCTCAAGGTGCTCTACGTCACCGGCGAGGAATCGGTGCGCCAGATCCGCATGCGGGCCA
ACCGCCTCAACATCGAGGATCCGGCGATTTCCGTGTCCACCGAGAACTGCGTCGAGGCCATTGTCGATCTGGCCGGGACC
ATGCAACCGGCCCTGCTGGCGGTGGATTCGATCCAGACGGTGTATAGCGAGGAGGTCGGGTCGGCGCCCGGCTCGGTCAC
CCAGGTGCGCGAGGCCACGGCCAGGCTGCTGGCCCTGGCCAAATCGAGCCATCTGCCGATTCTGCTGGTCGGCCACGTGA
CCAAGGACGGGGCCATCGCCGGTCCGCGGGTACTGGAGCATATGGTCGATACGGTGCTCTATTTCGAAGGGGATCGCGGC
CAGGTGTTCCGTATTCTACGGACGGTGAAGAACCGGTTCGGCTCGACCAACGAGATCGGGGTGTTCGAGATGCAGGAGAG
CGGCTTGGTCGGGGTGGACAACCCCTCGGCCCTGTTCCTCGCCGAGCGGCCGGTCAATGTGCCGGGGTCGGTGGTGTTGC
CCAGCGTCGAGGGCACGCGGCCAATCCTGGTCGAGGTCCAGGCCCTGGTCAGTCGCTCCAGTCTGGGCACGGCCCGGCGT
ACCGCCATCGGCGCCGATCCGCAGCGGCTGGCCCTGCTCACCGCCGTGCTGGAAAAAAAGCTCGGGGTGACGCTGTTTGA
TCACGACATCTTTCTCAACATCGCCGGCGGCATCCGCATCATCGAGCCGGCCCTGGACCTGGGGGTGGTGGCGGCCCTGC
TGTCCAGTTTTCTTGAGAAACCGATCGATCCCGGGACCGTGGTCTGCGGCGAGGTCGGCCTGGCCGGCGAGGTCCGGGCC
GTGGGCCAGATGGAGATGCGGCTGCGCGAGGCCGGCCGGCTTGGCTTCAAGACCTTTCTCATGCCGGAATCCTCGACGCG
CCAACTGCAGTCCAAGGCCAGGGAAGGATTGCACCTCCTGCCGGTGCGGACGGTGGCGGAGTTGGCCGACAGCCTGTTTC
GCGCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
51.007 |
98.242 |
0.501 |
| radA | Streptococcus mitis NCTC 12261 |
48.344 |
99.56 |
0.481 |
| radA | Streptococcus mitis SK321 |
48.344 |
99.56 |
0.481 |
| radA | Streptococcus pneumoniae TIGR4 |
50.588 |
93.407 |
0.473 |
| radA | Streptococcus pneumoniae D39 |
50.588 |
93.407 |
0.473 |
| radA | Streptococcus pneumoniae Rx1 |
50.588 |
93.407 |
0.473 |
| radA | Streptococcus pneumoniae R6 |
50.588 |
93.407 |
0.473 |