Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FOC71_RS08010 Genome accession   NZ_CP053999
Coordinates   1575855..1578089 (-) Length   744 a.a.
NCBI ID   WP_003072235.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1570855..1583089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS07995 (FOC71_07995) - 1571936..1575037 (-) 3102 WP_003072237.1 DNA polymerase III subunit alpha -
  FOC71_RS08000 (FOC71_08000) - 1575169..1575383 (+) 215 Protein_1559 GntR family transcriptional regulator -
  FOC71_RS08005 (FOC71_08005) - 1575393..1575697 (+) 305 Protein_1560 ATP-binding cassette domain-containing protein -
  FOC71_RS08010 (FOC71_08010) recJ 1575855..1578089 (-) 2235 WP_003072235.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FOC71_RS08015 (FOC71_08015) - 1578188..1578595 (-) 408 WP_003072233.1 GNAT family N-acetyltransferase -
  FOC71_RS08020 (FOC71_08020) - 1578579..1579310 (-) 732 WP_003072232.1 class I SAM-dependent methyltransferase -
  FOC71_RS08025 (FOC71_08025) - 1579320..1580075 (-) 756 WP_003072230.1 SDR family oxidoreductase -
  FOC71_RS08030 (FOC71_08030) - 1580085..1580693 (-) 609 WP_003072228.1 histidine phosphatase family protein -
  FOC71_RS08035 (FOC71_08035) rnz 1580739..1581668 (-) 930 WP_003072226.1 ribonuclease Z -
  FOC71_RS08040 (FOC71_08040) - 1581679..1582308 (-) 630 WP_003072225.1 cystathionine beta-lyase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83528.44 Da        Isoelectric Point: 4.4945

>NTDB_id=397046 FOC71_RS08010 WP_003072235.1 1575855..1578089(-) (recJ) [Streptococcus intermedius strain FDAARGOS_769]
MITSKYDWQIATNFSDEGFIKQAQKLGLEPSVANLVYQRGIQTEEALRDFLEASLDKLHDPYELHDMEKAVTRIRQAIEN
YEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNASVYKYFIENQEVSLIITVDNGVAGHEAIELAQ
SMGVDVIITDHHSMPEELPNASAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQIELLDLVAIGTIADMVSLTGENR
ILVKYGLSILKNTQRIGLQELFKISGIQEDEVDEEIVGFQIAPRLNALGRLDDPNPAIELLTGFDEEEARDIALMINQKN
DERKEMVQHIYDEAKFMIDPKKPVQVLAGKGWNPGVLGIVAGRLLEELHQPIIVLNIENGLAKGSARSIEAVDIFEALDP
HRELFVAFGGHAGAAGMTLDASRLEELSQVLTAYIENNQLDLSTKNDLFLDEELALPDLTLETLKNFEKLAPFGIDNKKP
VFYLKDFKVENARTMGAGNAHLKLKISQADVAFDVIAFGQGELATEFSQTKNLELAVTLSVNKWNGQTSLQLVLVDARVN
GIQLFNIRGKNARLPENVPILRFSEEMPDLGNSRSVVVYDVPNQLEQLKMIIQQGHFEAIYFKNEIVHPYYLTGFGTRAQ
FAKLYKTIYQFPEFDIRYKLKKLAAYLNIDSILLIKMIQIFEELGFVTVQDGVMRVNKEAEKKAIESSYIYQELKKMVKE
QELMALGTVQEIYDYLMEKDECSN

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=397046 FOC71_RS08010 WP_003072235.1 1575855..1578089(-) (recJ) [Streptococcus intermedius strain FDAARGOS_769]
ATGATTACATCAAAATATGATTGGCAAATTGCTACAAATTTTTCAGATGAGGGCTTTATCAAGCAAGCTCAAAAACTCGG
CTTGGAACCTTCGGTAGCCAATTTGGTATACCAGAGAGGGATTCAGACAGAAGAAGCACTGCGAGACTTTCTAGAAGCTA
GTTTGGACAAGCTACACGATCCTTATGAACTTCATGATATGGAGAAGGCGGTGACGCGCATTCGTCAAGCGATTGAAAAC
TATGAGCAGATTTTGATCTATGGCGATTATGATGCAGATGGGATGACTTCAGCTTCTATTGTTAAAGAAGCGTTAGAACA
ATTGGGAGCGGAGTGTCAAGTCTATTTACCCAATCGATTTACAGATGGTTATGGACCCAATGCTAGTGTTTACAAGTATT
TTATTGAAAATCAAGAAGTCTCACTCATTATTACAGTGGACAATGGTGTTGCAGGACATGAAGCAATTGAGTTAGCCCAG
TCCATGGGAGTGGATGTCATCATAACAGATCACCACTCTATGCCTGAGGAGCTGCCAAATGCCTCTGCTATCGTCCATCC
GGAACATAGCGGAGCAGATTACCCTTTCAAGCATCTGGCTGGCTGTGGGGTGGCTTTTAAGTTAGCGACTGCCCTTTTAG
AGGAAGTGCAGATTGAGTTGTTGGATCTAGTCGCTATCGGCACTATTGCGGATATGGTCAGCTTGACAGGTGAGAATCGG
ATTTTGGTCAAATATGGCTTATCTATTTTGAAAAACACTCAGCGCATCGGCTTGCAAGAACTTTTTAAGATTTCGGGCAT
TCAGGAAGATGAAGTAGATGAAGAAATAGTTGGTTTTCAGATAGCTCCTAGACTCAATGCTCTAGGTCGATTGGATGATC
CAAATCCTGCTATTGAACTTCTGACTGGTTTTGATGAAGAAGAAGCGCGTGACATCGCCCTGATGATTAATCAAAAAAAT
GACGAACGCAAGGAGATGGTGCAGCATATCTATGATGAAGCTAAGTTTATGATTGATCCTAAGAAGCCTGTTCAGGTTCT
AGCTGGCAAGGGTTGGAATCCAGGTGTTTTGGGAATTGTAGCAGGGCGACTTTTAGAAGAGTTGCATCAGCCGATCATCG
TGCTGAATATTGAAAATGGTTTAGCAAAAGGTAGTGCTCGCAGCATTGAAGCAGTTGATATTTTTGAAGCTCTAGATCCT
CACCGAGAGTTATTTGTAGCTTTTGGTGGGCATGCTGGGGCAGCTGGCATGACTCTTGACGCCAGTCGATTAGAAGAACT
CAGTCAGGTTTTGACGGCCTATATTGAAAATAATCAGCTGGATTTGTCTACTAAGAATGACCTTTTTTTGGATGAAGAAC
TAGCTTTGCCAGATCTGACGCTGGAAACTCTTAAAAACTTTGAAAAACTTGCTCCTTTTGGTATAGATAATAAAAAACCT
GTTTTCTATTTAAAAGATTTTAAAGTTGAAAATGCTCGTACCATGGGGGCAGGAAATGCTCACCTGAAACTAAAAATTTC
TCAGGCTGATGTTGCTTTTGATGTAATAGCTTTTGGACAAGGCGAACTTGCCACAGAATTTTCTCAAACTAAAAATTTAG
AGTTAGCAGTGACTCTGTCGGTCAACAAATGGAATGGTCAGACTAGTCTGCAACTTGTGTTGGTAGATGCTCGAGTCAAC
GGAATTCAGCTCTTTAATATTCGAGGTAAAAATGCTCGCTTACCTGAAAATGTACCTATTCTGCGTTTTTCAGAAGAAAT
GCCTGATTTGGGAAATAGTAGATCAGTTGTGGTCTATGACGTCCCCAATCAACTAGAACAACTAAAAATGATTATTCAAC
AAGGACATTTTGAAGCCATTTACTTTAAAAATGAGATTGTTCACCCCTATTATCTGACAGGTTTTGGAACGAGAGCCCAA
TTTGCCAAACTCTATAAAACGATTTATCAGTTTCCGGAGTTTGATATACGTTATAAACTAAAAAAGTTGGCTGCTTATCT
CAACATTGATTCAATTCTACTCATAAAGATGATTCAAATTTTTGAAGAACTGGGTTTTGTAACGGTTCAAGATGGAGTGA
TGCGAGTTAACAAGGAAGCAGAAAAAAAGGCTATTGAGAGTAGCTATATTTATCAAGAACTCAAAAAAATGGTCAAGGAG
CAGGAGCTGATGGCTCTAGGAACTGTTCAAGAAATTTATGATTATCTGATGGAAAAGGATGAATGTTCAAACTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-434)

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-734)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

73.919

99.462

0.735
  recJ Bacillus subtilis subsp. subtilis str. 168

38.015

100

0.397