Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GH772_RS02800 Genome accession   NZ_CP045777
Coordinates   281852..282136 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus paranthracis strain CFSAN068816     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 276852..287136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH772_RS02785 (GH772_02715) rnmV 277643..278200 (-) 558 WP_000692830.1 ribonuclease M5 -
  GH772_RS02790 (GH772_02720) - 278418..279185 (-) 768 WP_000895835.1 TatD family hydrolase -
  GH772_RS02795 (GH772_02725) metG 279352..281334 (-) 1983 WP_000159681.1 methionine--tRNA ligase -
  GH772_RS02800 (GH772_02730) abrB 281852..282136 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GH772_RS02805 (GH772_02735) rsmI 282157..283032 (-) 876 WP_000267830.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GH772_RS02810 (GH772_02740) - 283001..283291 (-) 291 WP_000414340.1 GIY-YIG nuclease family protein -
  GH772_RS02815 (GH772_02745) - 283278..284018 (-) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GH772_RS02820 (GH772_02750) yabA 284139..284489 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  GH772_RS02825 (GH772_02755) - 284504..285331 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  GH772_RS02830 (GH772_02760) holB 285337..286320 (-) 984 WP_000978581.1 DNA polymerase III subunit delta' -
  GH772_RS02835 (GH772_02765) tmk 286356..286982 (-) 627 WP_000677229.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=397041 GH772_RS02800 WP_000843036.1 281852..282136(+) (abrB) [Bacillus paranthracis strain CFSAN068816]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=397041 GH772_RS02800 WP_000843036.1 281852..282136(+) (abrB) [Bacillus paranthracis strain CFSAN068816]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment