Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FOC71_RS04185 Genome accession   NZ_CP053999
Coordinates   801042..801644 (-) Length   200 a.a.
NCBI ID   WP_003073700.1    Uniprot ID   T1ZGT7
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 796042..806644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS04170 (FOC71_04170) nadE 796392..797216 (+) 825 WP_003073706.1 ammonia-dependent NAD(+) synthetase -
  FOC71_RS04175 (FOC71_04175) pepC 797364..798701 (+) 1338 WP_003073704.1 aminopeptidase C -
  FOC71_RS04180 (FOC71_04180) pbp1a 798878..801049 (-) 2172 WP_003073702.1 penicillin-binding protein PBP1A -
  FOC71_RS04185 (FOC71_04185) recU 801042..801644 (-) 603 WP_003073700.1 Holliday junction resolvase RecU Machinery gene
  FOC71_RS04190 (FOC71_04190) - 801713..802234 (+) 522 WP_003073698.1 DUF1273 domain-containing protein -
  FOC71_RS04195 (FOC71_04195) gpsB 802310..802651 (+) 342 WP_003073696.1 cell division regulator GpsB -
  FOC71_RS04205 (FOC71_04205) - 803089..804243 (+) 1155 WP_037584542.1 class I SAM-dependent RNA methyltransferase -
  FOC71_RS04210 (FOC71_04210) - 804256..805698 (+) 1443 WP_003073691.1 cell division site-positioning protein MapZ family protein -
  FOC71_RS04215 (FOC71_04215) ahpC 805802..806368 (+) 567 WP_003073689.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23238.73 Da        Isoelectric Point: 9.8985

>NTDB_id=397008 FOC71_RS04185 WP_003073700.1 801042..801644(-) (recU) [Streptococcus intermedius strain FDAARGOS_769]
MVNYPHKVFSRNSLNFPKKKSVDFANRGMSFEKMINDTNDYYLSHELAVIHKKPTPIQIVKVDYPRRSRAKIVEAYFRQA
STTDYSGVYQGHYIDFEAKETRQKASMPMKNFHAHQIEHMEQVVKQGGICFVLLHFSTLNQTYLLPAPYLINFFKIDKGK
KSMPLDYIQRHGYSISQNGLPSIPYLEIIQQNLLGGKTNE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=397008 FOC71_RS04185 WP_003073700.1 801042..801644(-) (recU) [Streptococcus intermedius strain FDAARGOS_769]
ATGGTCAACTATCCACATAAAGTTTTCTCGCGCAACTCATTGAATTTTCCTAAAAAGAAATCAGTTGATTTTGCCAATCG
AGGAATGTCTTTTGAAAAAATGATCAATGACACAAATGATTATTACCTTAGTCATGAGTTGGCAGTTATTCACAAAAAAC
CGACTCCTATTCAAATCGTAAAAGTGGATTATCCCAGACGTAGTCGGGCAAAAATCGTAGAAGCCTACTTTCGACAAGCC
TCTACAACAGACTATTCCGGTGTTTATCAAGGACATTATATAGATTTTGAAGCAAAGGAAACTCGTCAAAAGGCTTCCAT
GCCCATGAAAAATTTTCATGCACATCAAATCGAACACATGGAACAAGTCGTCAAACAAGGAGGAATTTGTTTCGTTTTAT
TACACTTTTCAACTTTAAATCAAACATACTTGCTTCCTGCTCCTTATCTGATTAACTTCTTCAAGATTGACAAAGGGAAA
AAATCCATGCCACTTGATTACATTCAACGACATGGATATTCTATCTCACAGAATGGCCTTCCTAGCATTCCTTATCTTGA
AATCATTCAACAAAACTTACTAGGTGGTAAAACAAATGAATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZGT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.746

100

0.51