Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GH771_RS08405 Genome accession   NZ_CP045769
Coordinates   1821749..1822375 (-) Length   208 a.a.
NCBI ID   WP_058609205.1    Uniprot ID   A0AB38P8X5
Organism   Enterobacter cancerogenus strain MiY-F     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1816749..1827375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH771_RS08390 (GH771_08390) helD 1816988..1819042 (-) 2055 WP_153688628.1 DNA helicase IV -
  GH771_RS08395 (GH771_08395) - 1819164..1819610 (+) 447 WP_006174548.1 YccF domain-containing protein -
  GH771_RS08400 (GH771_08400) yccS 1819630..1821792 (+) 2163 WP_058609204.1 YccS family putative transporter -
  GH771_RS08405 (GH771_08405) sxy/tfoX 1821749..1822375 (-) 627 WP_058609205.1 TfoX/Sxy family DNA transformation protein Regulator
  GH771_RS08410 (GH771_08410) sulA 1822593..1823102 (+) 510 WP_058609206.1 SOS-induced cell division inhibitor SulA -
  GH771_RS08415 (GH771_08415) ompA 1823458..1824510 (+) 1053 WP_127463528.1 porin OmpA -
  GH771_RS08420 (GH771_08420) matP 1824574..1825026 (-) 453 WP_153688629.1 macrodomain Ter protein MatP -
  GH771_RS08425 (GH771_08425) - 1825213..1826973 (+) 1761 WP_153688630.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24059.62 Da        Isoelectric Point: 9.1543

>NTDB_id=396998 GH771_RS08405 WP_058609205.1 1821749..1822375(-) (sxy/tfoX) [Enterobacter cancerogenus strain MiY-F]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESATYCVKHPSSFLTLVKRGRPVLLN
YYRVDEGLWQDRQKLLQLSTYALDAARKERSLRYQRNRLKDLPNLTFQIEVLLYEAGITNEETLRELGAKTSWLKIRSKN
RALSIKVLFALEGAIEGMHEAALPANIRRELTEWFNTLPEVQESRSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=396998 GH771_RS08405 WP_058609205.1 1821749..1822375(-) (sxy/tfoX) [Enterobacter cancerogenus strain MiY-F]
ATGAAAAAGATATCATATGAACGGATTTATAAATCACAGGAATATCTCTCCCCTCTGGGTGAAATTCACCACCGGGCGCT
GTTCGGCGGCTACACCCTGGCGGTAGACGATGCGGTGTTTGCCATGGTGTCAGACGGTGAACTTTACCTGCGTGCCTGCG
AGGAGAGCGCGACCTATTGTGTCAAGCATCCTTCTTCCTTCTTAACGCTTGTTAAGCGAGGCCGCCCCGTCCTGCTGAAT
TACTATCGCGTGGATGAAGGGCTGTGGCAGGATCGGCAAAAACTGCTTCAGCTTTCCACTTATGCCCTCGATGCGGCACG
AAAAGAGCGTAGCCTGCGCTATCAACGAAACCGGCTCAAGGATCTGCCTAACCTGACTTTCCAGATTGAAGTGTTGCTCT
ACGAAGCCGGCATTACGAATGAAGAGACGTTGCGGGAGCTTGGCGCAAAGACCAGTTGGCTAAAAATCAGATCGAAAAAC
CGGGCGCTCAGTATCAAGGTGCTTTTTGCCCTTGAAGGGGCCATTGAGGGGATGCATGAGGCGGCACTCCCGGCGAACAT
TCGCCGGGAGCTTACGGAGTGGTTTAATACACTGCCTGAGGTGCAGGAGAGTCGTTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

61.576

97.596

0.601

Multiple sequence alignment