Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   FOC71_RS02150 Genome accession   NZ_CP053999
Coordinates   405407..407335 (-) Length   642 a.a.
NCBI ID   WP_003075093.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 400407..412335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS02130 (FOC71_02130) purM 400950..401972 (+) 1023 WP_003075099.1 phosphoribosylformylglycinamidine cyclo-ligase -
  FOC71_RS02135 (FOC71_02135) purN 401972..402517 (+) 546 WP_003075098.1 phosphoribosylglycinamide formyltransferase -
  FOC71_RS02140 (FOC71_02140) - 402563..403462 (+) 900 WP_003075096.1 exonuclease domain-containing protein -
  FOC71_RS02145 (FOC71_02145) purH 403798..405348 (+) 1551 WP_003075095.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  FOC71_RS02150 (FOC71_02150) lytF 405407..407335 (-) 1929 WP_003075093.1 GBS Bsp-like repeat-containing protein Regulator
  FOC71_RS02155 (FOC71_02155) purD 407531..408793 (+) 1263 WP_003075091.1 phosphoribosylamine--glycine ligase -
  FOC71_RS02160 (FOC71_02160) purE 409092..409580 (+) 489 WP_002273894.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FOC71_RS02165 (FOC71_02165) purK 409567..410661 (+) 1095 WP_003075086.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FOC71_RS02170 (FOC71_02170) - 410662..411702 (+) 1041 WP_003075084.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 71623.31 Da        Isoelectric Point: 7.7157

>NTDB_id=396993 FOC71_RS02150 WP_003075093.1 405407..407335(-) (lytF) [Streptococcus intermedius strain FDAARGOS_769]
MKKYSQLFLLSSALLSVFSAQLTVQASEANNASKNSNPTTLASDVTVNVSGNSVSINYIRSQAQNPYTVSHAVWSDENGQ
DDLKWYSASQTSTTVDLSQHSGYGTFHVHTYININGKMIGLNGMTFTLNKPTSQTKITTAGQIGQIHFTRNKDQKNSKIV
HAVWSEENGSDDLNWYDAEQEITKFDFSKHKGYGRYFVDTYENKNGKMIYQSGTTFNLEKPNPTIQTSFPEPGIMDIQIK
NVPETIYKLTVPTWSDKNGQDDLQWYAATKNPDGSYNVRVELKKHNYDTGTYHIHLYGESYVKPEFTGLAGITAQVDADK
LPSEEEQKPFFSVENINQEQGTYTVKVSETSKSKPIQSVRVPIWSTSNQSNIKWYAATDNGDGTFSTTFNIRNHQALSGT
YINHIYVKYKDGSEHSYATDSVSMFAEQIKTKITVTKRSIYNYEVTVTDAYGDGNIILPTWSEVNGQDDIQWYTATKTGN
GIYKFTIDTQKHTGSGLFHTHVYRNLNGKMIGLTGTSYQVEKPVISFQPNYAAATTYPKGQCTWGAKALAPWAGNYWGNG
GDWATSARRAGFKTGTTPQVGAIICWTDGSYGHVGVVTHIASNTRIQIQEANYAGKQYIGNFRGWFNPHAAEQGVVSYIY
PK

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=396993 FOC71_RS02150 WP_003075093.1 405407..407335(-) (lytF) [Streptococcus intermedius strain FDAARGOS_769]
ATGAAAAAATATAGTCAATTATTTTTACTATCCAGCGCCCTTTTGAGTGTTTTTTCAGCTCAACTAACAGTTCAAGCCTC
GGAAGCAAATAATGCTTCAAAAAACTCAAATCCAACAACTCTTGCTAGCGATGTTACTGTCAATGTTTCTGGCAATAGCG
TTTCTATCAACTACATACGTTCACAAGCCCAAAACCCCTACACCGTTTCCCATGCTGTTTGGTCTGATGAAAATGGGCAA
GATGACCTTAAATGGTATTCCGCATCTCAAACATCAACAACTGTTGATTTGAGCCAACATTCTGGGTACGGTACTTTCCA
TGTCCATACATATATCAACATCAATGGAAAAATGATCGGTTTAAATGGAATGACATTCACTCTGAATAAACCTACTAGTC
AAACAAAAATTACGACAGCTGGACAGATTGGACAAATTCATTTTACACGCAATAAAGATCAAAAAAATTCTAAAATTGTT
CATGCCGTTTGGTCTGAAGAAAATGGTAGTGATGATCTCAACTGGTACGATGCTGAACAGGAAATAACTAAATTTGACTT
TTCCAAACACAAGGGTTATGGGAGATATTTTGTAGATACTTATGAAAATAAAAATGGTAAAATGATTTATCAGTCAGGTA
CCACTTTTAACCTTGAAAAGCCAAATCCTACCATTCAGACTAGCTTTCCTGAGCCTGGTATCATGGATATTCAGATCAAA
AATGTCCCTGAAACAATCTATAAACTTACTGTTCCAACTTGGTCTGATAAAAACGGACAGGATGATCTTCAATGGTATGC
AGCTACTAAAAATCCTGATGGAAGCTACAATGTTAGAGTTGAGCTAAAAAAACACAACTATGACACAGGAACTTATCACA
TTCATCTTTACGGAGAAAGCTATGTCAAACCAGAGTTTACTGGCTTAGCTGGAATCACTGCCCAAGTTGATGCTGATAAA
TTGCCTTCTGAAGAAGAGCAAAAACCATTCTTCTCTGTTGAAAATATCAATCAAGAACAAGGGACTTATACCGTCAAAGT
TAGTGAAACTTCAAAGTCCAAGCCGATTCAATCCGTCCGAGTACCTATTTGGAGCACGAGCAATCAAAGCAATATCAAGT
GGTATGCAGCCACTGACAATGGAGACGGAACTTTTTCAACAACCTTTAATATCCGCAATCATCAGGCTTTGTCTGGAACC
TATATCAATCATATTTATGTAAAATATAAAGACGGTAGTGAGCATAGTTATGCAACAGATTCGGTTAGCATGTTCGCAGA
ACAGATAAAAACGAAAATAACTGTCACGAAACGCTCGATCTACAATTATGAAGTAACAGTAACAGATGCTTATGGAGATG
GAAATATCATCCTGCCTACCTGGTCTGAAGTCAACGGACAAGATGATATCCAGTGGTACACAGCTACTAAAACTGGAAAT
GGTATCTACAAGTTCACAATTGATACGCAAAAACACACTGGTAGCGGGCTTTTCCACACACATGTCTACCGCAATCTCAA
CGGTAAAATGATTGGACTAACAGGTACGAGCTATCAAGTAGAGAAACCTGTTATATCTTTTCAACCCAATTATGCCGCTG
CAACTACTTATCCAAAAGGTCAATGCACTTGGGGCGCTAAAGCTCTAGCACCTTGGGCTGGAAATTATTGGGGAAATGGT
GGCGATTGGGCTACTAGTGCCAGACGTGCTGGTTTTAAAACAGGAACAACTCCACAAGTCGGAGCCATTATTTGTTGGAC
AGATGGTAGTTACGGACATGTTGGAGTCGTCACTCACATCGCCTCAAACACACGCATTCAGATTCAAGAGGCAAACTACG
CTGGGAAACAGTACATTGGCAACTTTCGTGGCTGGTTTAATCCCCATGCAGCTGAGCAAGGAGTAGTCAGTTACATTTAT
CCAAAATAA

Domains

Predicted by InterProScan.

GBS Bsp-like repeat (GBS_Bsp-like)

(438-516)

GBS Bsp-like repeat (GBS_Bsp-like)

(230-300)

GBS Bsp-like repeat (GBS_Bsp-like)

(67-123)

GBS Bsp-like repeat (GBS_Bsp-like)

(333-419)

CHAP domain (CHAP)

(535-612)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

44.234

82.399

0.364

Multiple sequence alignment