Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FOC71_RS02095 Genome accession   NZ_CP053999
Coordinates   392188..392961 (+) Length   257 a.a.
NCBI ID   WP_003075136.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 387188..397961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS02075 (FOC71_02075) mreD 387966..388466 (+) 501 WP_003075140.1 rod shape-determining protein MreD -
  FOC71_RS02080 (FOC71_02080) pcsB 388576..389757 (+) 1182 WP_003075139.1 peptidoglycan hydrolase PcsB -
  FOC71_RS02085 (FOC71_02085) - 389891..390859 (+) 969 WP_003075138.1 ribose-phosphate diphosphokinase -
  FOC71_RS02090 (FOC71_02090) - 391023..392210 (+) 1188 WP_003075137.1 pyridoxal phosphate-dependent aminotransferase -
  FOC71_RS02095 (FOC71_02095) recO 392188..392961 (+) 774 WP_003075136.1 DNA repair protein RecO Machinery gene
  FOC71_RS02100 (FOC71_02100) plsX 392958..393956 (+) 999 WP_003075135.1 phosphate acyltransferase PlsX -
  FOC71_RS02105 (FOC71_02105) - 393953..394198 (+) 246 WP_003075134.1 acyl carrier protein -
  FOC71_RS02110 (FOC71_02110) purC 394343..395050 (+) 708 WP_003075131.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30094.63 Da        Isoelectric Point: 5.8518

>NTDB_id=396992 FOC71_RS02095 WP_003075136.1 392188..392961(+) (recO) [Streptococcus intermedius strain FDAARGOS_769]
MLKSITSKGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHVRNSKLSPVIQPLVVANFLMKVNDDGLSYIDDYQEVTVFQ
HINHDLFTMAYATYVVALADASIQDNEIDSALFAFLQKMLELMEQGLDYEVLTNIFEIQILSRFGVSLNFHECCFCHRIG
LPFDFSFTYNGVLCPEHYSKDERRSHLEPNILYLLDQFQAVQFNDLKTISLNSELKYQLRKVIDQIYEEYVGIHLKSKKF
IDSLEDWGKILNNKELK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=396992 FOC71_RS02095 WP_003075136.1 392188..392961(+) (recO) [Streptococcus intermedius strain FDAARGOS_769]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAACCGTAATTTTCGTGAAGATGATAAGCTAGTTAAAATTTT
CACAGAACAAGCTGGCAAGAGGATGTTTTTCGTGAAACACGTTAGAAATTCTAAGTTAAGTCCAGTTATTCAACCTCTGG
TAGTCGCTAATTTTTTGATGAAGGTAAATGATGACGGTTTGAGCTATATTGATGATTATCAAGAGGTTACCGTTTTCCAG
CATATCAACCATGATCTTTTTACAATGGCTTATGCGACTTATGTGGTAGCTCTAGCGGATGCTAGTATTCAGGATAACGA
AATAGACTCTGCTCTCTTTGCTTTTTTGCAAAAAATGTTAGAATTGATGGAGCAAGGTTTGGATTACGAAGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCGCGTTTTGGCGTTTCTTTGAATTTTCATGAGTGTTGTTTTTGCCACCGAATAGGG
CTACCGTTTGATTTTTCTTTTACCTATAATGGCGTTTTATGTCCAGAACATTATAGCAAAGATGAGCGACGGAGTCATTT
GGAACCCAATATTCTTTATTTATTAGACCAATTTCAAGCAGTTCAATTTAATGACCTGAAAACAATTTCGTTAAATTCTG
AATTAAAATATCAATTGCGAAAAGTAATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAATCCAAAAAATTT
ATTGATTCTCTGGAAGACTGGGGAAAAATTTTAAATAACAAGGAGTTGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

72.941

99.222

0.724