Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FOC73_RS09515 Genome accession   NZ_CP053998
Coordinates   1964897..1967098 (+) Length   733 a.a.
NCBI ID   WP_037604435.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1959897..1972098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS09490 (FOC73_09490) - 1961094..1961735 (+) 642 WP_002884121.1 hypothetical protein -
  FOC73_RS09495 (FOC73_09495) rnz 1961767..1962696 (+) 930 WP_002884122.1 ribonuclease Z -
  FOC73_RS09500 (FOC73_09500) - 1962696..1963463 (+) 768 WP_002884087.1 SDR family oxidoreductase -
  FOC73_RS09505 (FOC73_09505) - 1963475..1964185 (+) 711 Protein_1825 methyltransferase domain-containing protein -
  FOC73_RS09510 (FOC73_09510) - 1964187..1964591 (+) 405 WP_002884115.1 GNAT family N-acetyltransferase -
  FOC73_RS09515 (FOC73_09515) recJ 1964897..1967098 (+) 2202 WP_037604435.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FOC73_RS09520 (FOC73_09520) - 1967217..1967735 (+) 519 WP_002884049.1 adenine phosphoribosyltransferase -
  FOC73_RS09525 (FOC73_09525) metA 1967908..1968852 (+) 945 WP_002884138.1 homoserine O-succinyltransferase -
  FOC73_RS09530 (FOC73_09530) - 1968925..1969623 (+) 699 WP_002884002.1 DnaD domain-containing protein -
  FOC73_RS09535 (FOC73_09535) nth 1969623..1970267 (+) 645 WP_002884001.1 endonuclease III -
  FOC73_RS09540 (FOC73_09540) - 1970395..1971156 (+) 762 WP_002884107.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82192.33 Da        Isoelectric Point: 4.3132

>NTDB_id=396958 FOC73_RS09515 WP_037604435.1 1964897..1967098(+) (recJ) [Streptococcus salivarius strain FDAARGOS_771]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTEEALEDFLKSDLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMLGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVVGNEAIAYAQ
EQGVDVIVTDHHSMSAQLPDAFAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCHYVYDNDIDTSAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLRDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMALPEGVPTVEEAADTEPAVVLNTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQDLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=396958 FOC73_RS09515 WP_037604435.1 1964897..1967098(+) (recJ) [Streptococcus salivarius strain FDAARGOS_771]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACAGCAGCCAAGATTGCTTATGAACGTGGCGTGACGACAGAAGAGGCCCTTGAAGACTTTCTTAAGTCTG
ATCTATCACACCTTCATGACCCTTATCTTCTTCATGATATGGATAAGGCAGTTGCTAGAATTCGTCAAGCCATTGAAAAT
TATGAGCAAATCTTAGTCTATGGAGATTATGATGCGGATGGTATGACATCGGCATCGATTGTCAAGGAAGCCCTTGAAAT
GCTGGGCGCTGAGGCTCGAGTCTATTTGCCTAACCGTTTTACAGATGGTTATGGGCCAAACGAAAGCGTCTACAAGTACT
TCATTGAGCAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGGGTAGTGGGTAATGAGGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGTATGTCGGCACAGCTTCCAGATGCCTTTGCCATTGTCCATCC
AGAGCATCCAGATGCCGATTATCCTTTTAAGTATTTGGCAGGATGTGGTGTAGCTTTCAAATTGGCAACGGCCCTCCTTG
AAACAATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCTGATATGGTTAGCCTTACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTCAAGACTACTGAGCGTATTGGGCTTCAAGAATTGCTCCGCATCTCAGATGT
GGACCCAACAACGATTTCCGAAGAAACGGTCGGCTTCAAACTGGCTCCTCAACTCAATGCCTTGGGTCGCTTAGATGATC
CAAACCCAGCCATTGAACTGCTGACCGGATTTGACGATGAGGAAGCTCAGGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGATGAAGCCATGACTATGGTAGACTTGGACAAACCAGTTCAGGTTTT
GGCCAAGGAAGGTTGGCATCCTGGCGTTCTAGGTATTGTGGCTGGGCGCATCATGGAGCAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGTCTGGCTAAGGGATCAGCCCGTAGTTTGGAATCTATCAATATCTTCCATGCCCTTGATGAC
CACCGAGACATCTTTACTGCTTTTGGAGGACACGCTGGAGCGGCTGGGATGACCCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGTCATTATGTCTACGATAATGACATTGATACAAGTGCCAAAAATACGCTTAATTTAGACGAGGAGC
TCCAACTCAGTGAGCTTAGCTTGGATACCATTAAGAGTCTTGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACGTGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGAGCCCATCTTAAGTTTAAGGTGAA
GCAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTAATCTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGGCAGACAACGCTACAGCTCATGCTAGAAGATGCGCGTGTAGAT
GGTGTTCAATTATTTGATTTTCGCTCAAAAAATATGGCACTGCCTGAAGGCGTACCAACGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAACACCCTACCTGAATCAGCGACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTCCAGG
CTATCTATTTTAAAAATAGCATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTCCCAGAATTCGATGTCCGCTATAAACTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAGAAACGTGAGATTGAGGACAGTCAAATTTTCCAAGATCTGAAACGACTAGTTAAGTTCCAAGAACTCATGGCT
CTGGGAACACCACAGGAAATTTATGACTGGCTTTATAAGTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-431)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.935

100

0.682
  recJ Bacillus subtilis subsp. subtilis str. 168

38.059

100

0.407