Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GH769_RS20900 Genome accession   NZ_CP045767
Coordinates   4606606..4607973 (-) Length   455 a.a.
NCBI ID   WP_003194313.1    Uniprot ID   A0AAJ3JSD5
Organism   Pseudomonas sp. CFSAN084952     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4601606..4612973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH769_RS20880 (GH769_20880) yjiA 4602515..4603471 (-) 957 WP_014720013.1 GTPase -
  GH769_RS20885 (GH769_20885) - 4603655..4603852 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  GH769_RS20890 (GH769_20890) - 4603868..4605934 (-) 2067 WP_014720014.1 carbon starvation CstA family protein -
  GH769_RS20895 (GH769_20895) - 4606109..4606477 (+) 369 WP_020301754.1 PilZ domain-containing protein -
  GH769_RS20900 (GH769_20900) radA 4606606..4607973 (-) 1368 WP_003194313.1 DNA repair protein RadA Machinery gene
  GH769_RS20905 (GH769_20905) - 4608009..4608548 (-) 540 WP_014720017.1 ankyrin repeat domain-containing protein -
  GH769_RS20910 (GH769_20910) katB 4608606..4610147 (-) 1542 WP_020301753.1 catalase KatB -
  GH769_RS20915 (GH769_20915) mscL 4610435..4610851 (+) 417 WP_014720019.1 large-conductance mechanosensitive channel protein MscL -
  GH769_RS20920 (GH769_20920) - 4610893..4611669 (-) 777 WP_032904169.1 ferredoxin--NADP reductase -
  GH769_RS20925 (GH769_20925) - 4612106..4612816 (+) 711 WP_020301751.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48757.26 Da        Isoelectric Point: 6.8987

>NTDB_id=396950 GH769_RS20900 WP_003194313.1 4606606..4607973(-) (radA) [Pseudomonas sp. CFSAN084952]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=396950 GH769_RS20900 WP_003194313.1 4606606..4607973(-) (radA) [Pseudomonas sp. CFSAN084952]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAATG
CGGCGCGTGGAACACCCTGACTGAAACCATGATCGAGAGCGGCGGTGCCGCGGCCCCCACCGGCCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATCCCGCGCTTTTCCACCGCCTCCGGCGAATTG
GACCGGGTGCTGGGCGGTGGCCTGGTGGACGGCTCGGTGGTATTGATTGGCGGTGACCCGGGCATCGGCAAGTCCACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCTGCGCTGTATGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGGCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCCAAGGTCATGGTTATCGACTCGATCCAGACGATTTTCACTGAACAACTGCAATCGGCACC
CGGCGGTGTGTCCCAGGTGCGCGAAAGCGCGGCGCTGTTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCACTGGCCGGGCCACGGGTGTTGGAACACATGGTCGACACCGTGTTGTATTTCGAA
GGGGAATCCGACGGTCGCCTGCGCTTGCTGCGAGCGGTGAAGAACCGTTTTGGCGCCGTCAACGAACTGGGGGTGTTCGC
CATGACCGACCGGGGGCTGAAAGAAGTCTCGAACCCCTCGGCGATTTTTCTCACCCGCGCTCAGGAAGAAGTCCCAGGCA
GTGTGGTGATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTGGCC
AACCCACGGCGGGTCACACTGGGCCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCATGGCGGCAT
TCCGACCCACGACCAGGATGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGTTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGTAATCGGCCGTTGCCCCATGACTTGCTGGTGTTTGGGGAGGTGGGGTTGTCGGGC
GAAGTGCGCCCGGTGCCGAGTGGGCAGGAGCGGTTGAAGGAAGCGGCCAAGCATGGCTTCAAACGGGCGATTGTGCCCAA
GGGCAATGCGCCGAAGGAGGCGCCGCCGGGGTTGCAGATTATTGCAGTGACGCGGCTGGAGCAGGCGTTGGATGCCCTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466

Multiple sequence alignment