Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   FOC73_RS07760 Genome accession   NZ_CP053998
Coordinates   1598224..1600209 (+) Length   661 a.a.
NCBI ID   WP_002885962.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1593224..1605209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS07740 (FOC73_07740) - 1593518..1593934 (+) 417 WP_002886206.1 F0F1 ATP synthase subunit epsilon -
  FOC73_RS07745 (FOC73_07745) - 1594195..1595475 (+) 1281 WP_002886004.1 FtsW/RodA/SpoVE family cell cycle protein -
  FOC73_RS07750 (FOC73_07750) tuf 1595713..1596909 (+) 1197 WP_002886182.1 elongation factor Tu -
  FOC73_RS07755 (FOC73_07755) tpiA 1597164..1597922 (+) 759 WP_002885895.1 triose-phosphate isomerase -
  FOC73_RS07760 (FOC73_07760) recP/tkt 1598224..1600209 (+) 1986 WP_002885962.1 transketolase Machinery gene
  FOC73_RS07770 (FOC73_07770) tmk 1600512..1601141 (+) 630 WP_002885906.1 dTMP kinase -
  FOC73_RS07775 (FOC73_07775) - 1601150..1602025 (+) 876 WP_002886157.1 DNA polymerase III subunit delta' -
  FOC73_RS07780 (FOC73_07780) yaaT 1602022..1602828 (+) 807 WP_002886063.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  FOC73_RS07785 (FOC73_07785) yabA 1602815..1603135 (+) 321 WP_002885932.1 DNA replication initiation control protein YabA -
  FOC73_RS07790 (FOC73_07790) rsmI 1603138..1604004 (+) 867 WP_002886001.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70878.50 Da        Isoelectric Point: 4.7323

>NTDB_id=396945 FOC73_RS07760 WP_002885962.1 1598224..1600209(+) (recP/tkt) [Streptococcus salivarius strain FDAARGOS_771]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVSMDDLKNFRQWGSKTPGHPEVDHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKSVYGYDAPAFTVPDEVARRFEVGIKFRGEAAENAWQTKFAEYE
SAYPELAAEYKAAFANEPVHVDLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQPDNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAEAGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=396945 FOC73_RS07760 WP_002885962.1 1598224..1600209(+) (recP/tkt) [Streptococcus salivarius strain FDAARGOS_771]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCCATTCAAGCCGCGAATTC
TGGACACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCATATGTACTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCTTTGCTTTATAGTCTCTTGCAC
CTTTCAGGCTATGATGTATCAATGGATGATTTGAAGAACTTCCGTCAATGGGGTTCTAAGACTCCGGGTCACCCTGAAGT
TGATCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGAATTGCTAATGCAGTAGGTATGGCAATGGCTG
AAGCACATTTGGCTGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGAGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCCGCTAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTTCTTCTTTACGA
TTCAAACGATATTTCGCTTGATGGACCAACATCAATGGCTTTCACTGAGGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATCCTTGTTAAAGATGGTAATGATTTGGAAGCTATTGCTAAAGCTATCGAAGAAGCTAAAGCTGAGACAGAT
AAACCATCTATTATCGAAGTTAAGACAATCATTGGTTACGGAGCTGAAGGACAAGGAACATCAGCTGTCCACGGTGCTCC
AATTGGTCAAGACGGCATTGATCACGCAAAAAGTGTTTACGGTTACGATGCACCGGCATTTACAGTTCCAGATGAAGTTG
CTCGTCGTTTTGAAGTTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
TCTGCTTACCCAGAATTGGCTGCTGAATACAAGGCTGCCTTTGCAAATGAACCTGTACACGTTGACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTGTCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAACCAGACAACTATGCTGGA
CGTAATATTTGGTTCGGTGTACGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCCCTTCATGGTGGTACTCGTGT
TTATGGTGGTACTTTCTTTGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCACTTCAAAACTTGCCAGTGA
CTTATGTTATGACACACGATTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGCGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCGTGGAAACGTGCTTTGGCTGA
AACTGAACGTCCAACAATGCTAGTTTTGACACGTCAAAACTTGCCAGTCCTTGACGGTACAGCTGAAAATGCTGAAGCTG
GTGTCAATAAAGGAGCTTACATCATCTCTGAAGCTAAAGGTGATCTTGATGGTATTATCATTGCGACTGGTTCAGAAGTG
AAATTGGCGCTTGATACGCAAGCTGCTCTTGAAGCAGAAGGTGTGCATGTTCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCTTACAAAGAAGAAGTTCTTCCAGCAGCTGTTACAAAACGTTTGGCTATTGAAGCCGGAA
CTAGCTTTGGTTGGGGCAAATATGTTGGTCTTGCAGGTAAAACACTTACTATCGATACTTGGGGGGCATCAGCACCTGGT
GACCGTATCTTTAAGGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.991

99.546

0.567