Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FOC73_RS06560 Genome accession   NZ_CP053998
Coordinates   1346343..1346939 (-) Length   198 a.a.
NCBI ID   WP_002883653.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1341343..1351939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS06545 (FOC73_06545) - 1342063..1342506 (+) 444 WP_002883593.1 DUF805 domain-containing protein -
  FOC73_RS06550 (FOC73_06550) pepC 1342608..1343945 (+) 1338 WP_002883605.1 aminopeptidase C -
  FOC73_RS06555 (FOC73_06555) pbp1a 1344052..1346343 (-) 2292 WP_002883608.1 penicillin-binding protein PBP1A -
  FOC73_RS06560 (FOC73_06560) recU 1346343..1346939 (-) 597 WP_002883653.1 Holliday junction resolvase RecU Machinery gene
  FOC73_RS06565 (FOC73_06565) - 1347016..1347531 (+) 516 WP_002883685.1 DUF1273 domain-containing protein -
  FOC73_RS06570 (FOC73_06570) gpsB 1347640..1347972 (+) 333 WP_002883687.1 cell division regulator GpsB -
  FOC73_RS06580 (FOC73_06580) - 1348504..1349670 (+) 1167 WP_037604013.1 class I SAM-dependent RNA methyltransferase -
  FOC73_RS06585 (FOC73_06585) - 1349673..1351673 (+) 2001 WP_002883602.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22784.31 Da        Isoelectric Point: 9.9828

>NTDB_id=396926 FOC73_RS06560 WP_002883653.1 1346343..1346939(-) (recU) [Streptococcus salivarius strain FDAARGOS_771]
MVNYPHQISRKIAQVRPKKSNRVDFANRGMSFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIEHMSQVISQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAITEAAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=396926 FOC73_RS06560 WP_002883653.1 1346343..1346939(-) (recU) [Streptococcus salivarius strain FDAARGOS_771]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTCCTAAAAAATCAAATAGAGTTGACTTTGCCAA
TCGGGGTATGAGCTTTGAATCTGCTATTAACGCGACTAATGATTACTATTTGTCGCGTGGTTTAGCCGTTATTCATAAAA
AACCCACTCCTGTTCAAATTGTCAAAGTCGATTATCCCAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGACAA
GCCTCTACTACCGACTACTCTGGTGTTTACAAAGGATACTACATTGATTTTGAAGCCAAAGAGACTCGACAAAAGACATC
CATGCCTATGAAAAACTTTCATGCGCATCAAATTGAGCACATGTCTCAGGTCATCAGTCAAGATGGGATCTGCTTCGTGC
TACTTCACTTCTCGACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAAGGG
ACGAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGCTATGCAATTACAGAAGCAGCTTATCCTCAAGTTCCTTATTT
AGAAATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.246

100

0.515