Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FOC73_RS05610 Genome accession   NZ_CP053998
Coordinates   1155840..1156613 (+) Length   257 a.a.
NCBI ID   WP_004181941.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1150840..1161613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS05590 (FOC73_05590) mreD 1151289..1151813 (+) 525 WP_004181955.1 rod shape-determining protein MreD -
  FOC73_RS05595 (FOC73_05595) - 1151898..1153409 (+) 1512 WP_002889559.1 CHAP domain-containing protein -
  FOC73_RS05600 (FOC73_05600) - 1153621..1154586 (+) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  FOC73_RS05605 (FOC73_05605) - 1154678..1155853 (+) 1176 WP_004181974.1 pyridoxal phosphate-dependent aminotransferase -
  FOC73_RS05610 (FOC73_05610) recO 1155840..1156613 (+) 774 WP_004181941.1 DNA repair protein RecO Machinery gene
  FOC73_RS05615 (FOC73_05615) plsX 1156824..1157828 (+) 1005 WP_004181927.1 phosphate acyltransferase PlsX -
  FOC73_RS05620 (FOC73_05620) - 1157828..1158073 (+) 246 WP_004181960.1 phosphopantetheine-binding protein -
  FOC73_RS05625 (FOC73_05625) purC 1158332..1159039 (+) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29709.82 Da        Isoelectric Point: 5.0672

>NTDB_id=396913 FOC73_RS05610 WP_004181941.1 1155840..1156613(+) (recO) [Streptococcus salivarius strain FDAARGOS_771]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLASLTDAAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYAEDERRSHLNPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIMNKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=396913 FOC73_RS05610 WP_004181941.1 1155840..1156613(+) (recO) [Streptococcus salivarius strain FDAARGOS_771]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAACGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATGATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCAAGCAGAATCCTTTAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTTCTCTGACGGATGCTGCTATTGCTGACGGTGTGGC
AGATGCGCAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTTCGCTTGAATTTTCATGAGTGTGTCTTTTGCCATCGTGTGGGCCTT
CCTTTTGATTTTTCGTATAAGTTCTCGGGGCTACTTTGTCCAAATCATTATGCAGAGGATGAAAGGCGTAGTCACTTAAA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTAAAAAGTAAGAAATTTATT
GATAATCTAAATTCTTGGGGCCATATTATGAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.846

98.444

0.619