Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   FOC73_RS03055 Genome accession   NZ_CP053998
Coordinates   671821..672558 (-) Length   245 a.a.
NCBI ID   WP_002884816.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 666821..677558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS03035 (FOC73_03035) - 668146..668394 (-) 249 WP_002884680.1 KH domain-containing protein -
  FOC73_RS03040 (FOC73_03040) rpsP 668406..668678 (-) 273 WP_002884675.1 30S ribosomal protein S16 -
  FOC73_RS03045 (FOC73_03045) - 668841..670220 (-) 1380 WP_002884473.1 hypothetical protein -
  FOC73_RS03050 (FOC73_03050) - 670332..671657 (-) 1326 WP_022496804.1 sensor histidine kinase -
  FOC73_RS03055 (FOC73_03055) comE/comE1 671821..672558 (-) 738 WP_002884816.1 LytTR family DNA-binding domain-containing protein Regulator
  FOC73_RS03060 (FOC73_03060) - 672773..674095 (+) 1323 WP_002884412.1 matrixin family metalloprotease -
  FOC73_RS03065 (FOC73_03065) tehB 674878..675756 (+) 879 WP_002884191.1 SAM-dependent methyltransferase TehB -
  FOC73_RS03070 (FOC73_03070) - 675839..676591 (-) 753 WP_002884666.1 DUF4767 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28066.00 Da        Isoelectric Point: 4.7123

>NTDB_id=396877 FOC73_RS03055 WP_002884816.1 671821..672558(-) (comE/comE1) [Streptococcus salivarius strain FDAARGOS_771]
MLSIIVLEDDALQRHRVSRLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDTDLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVSNVTSVDRTANMVFFEGDESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=396877 FOC73_RS03055 WP_002884816.1 671821..672558(-) (comE/comE1) [Streptococcus salivarius strain FDAARGOS_771]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCATCGTGTTAGTCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACCTTTTATGAGCAGGGGCAAGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTGGATATTGACCTTAAAAATCAAACGAAGCAGGGACTAGATATTGGGCTTGAAATCCGTAAGGAA
GACTTGAAAGCACAAATCGCTTTTGTTACAGCCTACTCTGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
GGACTTTGTTGATAAATCCATGGAAGATACAGATCTTAAGAGAGCCTTGGTAGAACTTTTAGATTTTGCGTATTCGCAGG
TTGAGCAAGAAACCAAGGCACAGAGTCTGACGGTAAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TACATTGAAACAGCCCCTGTGCCACATAAGTTGATCGCTCACACCAAGTCAAATCTAGTAGAATTCTATGGAAAAATTGC
AGAAGTAGCGAAATTGGATGATATTTTCTTCCAAACGCATCGCTCTTTTGTTGTCAATGTGAGTAATGTGACAAGTGTGG
ATCGTACGGCTAATATGGTCTTCTTTGAGGGAGACGAGTCATGCCTCCTCTCGCGGACACGTAAAAAGGAACTTTTGGAA
CGATTGAAAAATCGTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-123)

LytTr DNA-binding domain (LytTR)

(152-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

37.037

99.184

0.367