Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   FOC73_RS01885 Genome accession   NZ_CP053998
Coordinates   412471..413136 (-) Length   221 a.a.
NCBI ID   WP_002885228.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 407471..418136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS01850 (FOC73_01850) - 407607..407786 (-) 180 WP_002885306.1 hypothetical protein -
  FOC73_RS01855 (FOC73_01855) - 407797..408006 (-) 210 WP_002885203.1 hypothetical protein -
  FOC73_RS01860 (FOC73_01860) - 408440..409375 (-) 936 WP_002885259.1 bile acid:sodium symporter family protein -
  FOC73_RS01865 (FOC73_01865) - 409516..409965 (-) 450 WP_002885383.1 cytidine deaminase -
  FOC73_RS01870 (FOC73_01870) - 409976..410713 (-) 738 WP_002885270.1 ABC transporter permease -
  FOC73_RS01875 (FOC73_01875) - 410710..411591 (-) 882 WP_002885365.1 ABC transporter ATP-binding protein -
  FOC73_RS01880 (FOC73_01880) - 411657..412334 (-) 678 WP_002885296.1 hypothetical protein -
  FOC73_RS01885 (FOC73_01885) hdrM 412471..413136 (-) 666 WP_002885228.1 hypothetical protein Regulator
  FOC73_RS01890 (FOC73_01890) - 413149..413643 (-) 495 WP_002885314.1 YkgJ family cysteine cluster protein -
  FOC73_RS01895 (FOC73_01895) - 413727..415727 (-) 2001 WP_002885375.1 ABC transporter permease -
  FOC73_RS01900 (FOC73_01900) - 415729..416487 (-) 759 WP_002885325.1 ABC transporter ATP-binding protein -
  FOC73_RS01905 (FOC73_01905) - 416632..417603 (-) 972 WP_037605070.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25083.20 Da        Isoelectric Point: 9.7598

>NTDB_id=396862 FOC73_RS01885 WP_002885228.1 412471..413136(-) (hdrM) [Streptococcus salivarius strain FDAARGOS_771]
MKRFNAGVITLLIIAAYFIATAFIPDLYLAFNYKLILALLFVLLSWQSKGKFLFFLGMAFLSTYIHDLFRLDYSEWTLFV
GILILGIAVDRLSKPSYKKKFSYKVSKEHEREIFAKTLFSESVQVVTSQNLETVYANADFGRLTLDLRQAQFMTDRPQIV
VQANFSQVIIRVPKDWQVDTHGLHTSLAGVKGYDSLGERELSSTTVSLTGSVSFGQVTIKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=396862 FOC73_RS01885 WP_002885228.1 412471..413136(-) (hdrM) [Streptococcus salivarius strain FDAARGOS_771]
ATGAAACGCTTTAATGCAGGTGTTATTACCTTACTTATCATTGCTGCCTATTTTATCGCAACAGCTTTTATTCCAGATTT
GTATTTGGCTTTTAATTATAAGTTGATTTTAGCCTTGCTTTTTGTGCTTTTGAGCTGGCAATCTAAGGGGAAATTTCTCT
TTTTCTTGGGGATGGCTTTTCTGTCGACCTATATCCATGACCTATTCAGATTGGACTATTCAGAATGGACACTCTTTGTA
GGGATTCTTATCTTGGGGATTGCAGTGGACCGTTTGAGCAAGCCAAGTTATAAGAAAAAATTCTCTTACAAGGTGTCTAA
AGAACATGAGCGAGAAATTTTTGCTAAGACTCTTTTTTCAGAGTCTGTGCAAGTGGTGACTTCTCAAAACCTCGAAACTG
TCTATGCCAATGCTGATTTTGGACGTTTGACCTTGGATTTGCGTCAGGCGCAGTTTATGACGGACCGACCTCAGATTGTT
GTTCAGGCAAATTTTTCTCAGGTTATCATTCGAGTACCTAAGGATTGGCAAGTGGATACACACGGGCTTCATACAAGCCT
AGCAGGAGTGAAAGGCTATGATAGTCTAGGAGAGCGAGAGTTATCAAGCACTACAGTTTCTCTAACAGGATCTGTATCCT
TTGGACAGGTAACTATCAAACATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

37.037

97.738

0.362