Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GH766_RS20950 Genome accession   NZ_CP045753
Coordinates   4308689..4309294 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4303689..4314294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH766_RS20930 (GH766_20930) - 4304084..4305844 (-) 1761 WP_000156448.1 Lon protease family protein -
  GH766_RS20935 (GH766_20935) matP 4306030..4306482 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  GH766_RS20940 (GH766_20940) ompA 4306554..4307606 (-) 1053 WP_023193195.1 porin OmpA -
  GH766_RS20945 (GH766_20945) sulA 4307963..4308472 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  GH766_RS20950 (GH766_20950) sxy/tfoX 4308689..4309294 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  GH766_RS20955 (GH766_20955) yccS 4309281..4311434 (-) 2154 WP_000950869.1 YccS family putative transporter -
  GH766_RS20960 (GH766_20960) - 4311453..4311899 (-) 447 WP_001261222.1 YccF domain-containing protein -
  GH766_RS20965 (GH766_20965) helD 4312023..4314077 (+) 2055 WP_023193194.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=396822 GH766_RS20950 WP_001202375.1 4308689..4309294(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=396822 GH766_RS20950 WP_001202375.1 4308689..4309294(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTCATGAAATGCGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment