Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HQN50_RS18900 Genome accession   NZ_CP053922
Coordinates   4039695..4040291 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain YD001     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4034695..4045291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN50_RS30475 - 4035041..4035238 (-) 198 Protein_3741 TetR family transcriptional regulator -
  HQN50_RS18880 - 4035331..4036914 (+) 1584 WP_073671129.1 NAD(P)/FAD-dependent oxidoreductase -
  HQN50_RS18885 - 4036911..4037798 (+) 888 WP_003103932.1 SDR family oxidoreductase -
  HQN50_RS18890 - 4037872..4038411 (+) 540 WP_003103931.1 CbrC family protein -
  HQN50_RS18895 - 4038424..4039572 (-) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  HQN50_RS18900 recR 4039695..4040291 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  HQN50_RS18905 - 4040370..4040696 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  HQN50_RS18910 dnaX 4040742..4042847 (-) 2106 WP_086230071.1 DNA polymerase III subunit gamma/tau -
  HQN50_RS18915 - 4042884..4043750 (+) 867 WP_003122917.1 ABC transporter substrate-binding protein -
  HQN50_RS18925 - 4044004..4044381 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=396796 HQN50_RS18900 WP_003087237.1 4039695..4040291(-) (recR) [Pseudomonas aeruginosa strain YD001]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=396796 HQN50_RS18900 WP_003087237.1 4039695..4040291(-) (recR) [Pseudomonas aeruginosa strain YD001]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGTGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48