Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HQN50_RS09600 Genome accession   NZ_CP053922
Coordinates   2035456..2035785 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain YD001     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2030456..2040785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN50_RS09585 - 2031256..2032212 (+) 957 WP_003104579.1 SDR family oxidoreductase -
  HQN50_RS09590 - 2032214..2033233 (+) 1020 WP_003158833.1 glycosyltransferase family 4 protein -
  HQN50_RS09595 - 2033268..2035265 (+) 1998 WP_023088173.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  HQN50_RS09600 comEA/comE1 2035456..2035785 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  HQN50_RS09610 - 2036002..2037198 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  HQN50_RS09615 uvrB 2037386..2039398 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=396769 HQN50_RS09600 WP_003104586.1 2035456..2035785(+) (comEA/comE1) [Pseudomonas aeruginosa strain YD001]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=396769 HQN50_RS09600 WP_003104586.1 2035456..2035785(+) (comEA/comE1) [Pseudomonas aeruginosa strain YD001]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385