Detailed information NTG0396764

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HQN50_RS06790
• Genome accession: NZ_CP053922
• Coordinates: 1457715..1458719 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain YD001
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1452715..1463719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQN50_RS06760	fghA	1452807..1453658 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HQN50_RS06765	ispF	1453729..1454202 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HQN50_RS06770	truD	1454199..1455266 (+)	1068	WP_023088112.1	tRNA pseudouridine(13) synthase TruD	-
HQN50_RS06775	surE	1455254..1456003 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HQN50_RS06780	-	1456036..1456671 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HQN50_RS06785	-	1456717..1457610 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
HQN50_RS06790	rpoS	1457715..1458719 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HQN50_RS06795	fdxA	1459146..1459469 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HQN50_RS06800	mutS	1459536..1462115 (-)	2580	WP_003105609.1	DNA mismatch repair protein MutS	-
HQN50_RS06805	-	1462175..1463149 (-)	975	WP_077563222.1	tyrosine-type recombinase/integrase	-
HQN50_RS06810	-	1463159..1463368 (-)	210	WP_071538228.1	DUF4224 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=396764 HQN50_RS06790 WP_003113871.1 1457715..1458719(+) (rpoS) [Pseudomonas aeruginosa strain YD001]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=396764 HQN50_RS06790 WP_003113871.1 1457715..1458719(+) (rpoS) [Pseudomonas aeruginosa strain YD001]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653