Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HPT07_RS26125 Genome accession   NZ_CP053917
Coordinates   5532572..5533168 (+) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain PSE6684     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5527572..5538168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT07_RS26100 (HPT07_26100) - 5528503..5528880 (+) 378 WP_003083354.1 hypothetical protein -
  HPT07_RS26110 (HPT07_26110) - 5529134..5530000 (-) 867 WP_023657576.1 ABC transporter substrate-binding protein -
  HPT07_RS26115 (HPT07_26115) dnaX 5530037..5532121 (+) 2085 WP_033988798.1 DNA polymerase III subunit gamma/tau -
  HPT07_RS26120 (HPT07_26120) - 5532167..5532493 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  HPT07_RS26125 (HPT07_26125) recR 5532572..5533168 (+) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  HPT07_RS26130 (HPT07_26130) - 5533291..5534439 (+) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  HPT07_RS26135 (HPT07_26135) - 5534452..5534991 (-) 540 WP_033988800.1 CbrC family protein -
  HPT07_RS26140 (HPT07_26140) - 5535065..5535952 (-) 888 WP_009314747.1 SDR family oxidoreductase -
  HPT07_RS26145 (HPT07_26145) - 5535949..5537532 (-) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  HPT07_RS32570 - 5537655..5537774 (+) 120 Protein_5169 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=396737 HPT07_RS26125 WP_003087237.1 5532572..5533168(+) (recR) [Pseudomonas aeruginosa strain PSE6684]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=396737 HPT07_RS26125 WP_003087237.1 5532572..5533168(+) (recR) [Pseudomonas aeruginosa strain PSE6684]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGGACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGGATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48