Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPT07_RS20785 Genome accession   NZ_CP053917
Coordinates   4407545..4408987 (+) Length   480 a.a.
NCBI ID   WP_003141219.1    Uniprot ID   A0A0H2ZGF7
Organism   Pseudomonas aeruginosa strain PSE6684     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4402545..4413987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT07_RS20765 (HPT07_20765) - 4403213..4404784 (-) 1572 WP_031636614.1 DUF4129 domain-containing protein -
  HPT07_RS20770 (HPT07_20770) - 4404771..4405751 (-) 981 WP_003134640.1 stage II sporulation protein M -
  HPT07_RS20775 (HPT07_20775) - 4405748..4406545 (-) 798 WP_003134638.1 RDD family protein -
  HPT07_RS20780 (HPT07_20780) - 4406583..4407320 (-) 738 WP_003101171.1 hypothetical protein -
  HPT07_RS20785 (HPT07_20785) sbcB 4407545..4408987 (+) 1443 WP_003141219.1 exodeoxyribonuclease I Machinery gene
  HPT07_RS20790 (HPT07_20790) mvaT 4409072..4409446 (-) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  HPT07_RS20795 (HPT07_20795) purU 4409706..4410557 (+) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  HPT07_RS20800 (HPT07_20800) - 4410607..4410819 (+) 213 WP_003101176.1 hypothetical protein -
  HPT07_RS20805 (HPT07_20805) - 4410794..4411795 (-) 1002 WP_003093885.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  HPT07_RS20810 (HPT07_20810) - 4411792..4412553 (-) 762 WP_003093883.1 DUF2334 domain-containing protein -
  HPT07_RS20815 (HPT07_20815) - 4412546..4413661 (-) 1116 WP_033939193.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55477.76 Da        Isoelectric Point: 5.5542

>NTDB_id=396726 HPT07_RS20785 WP_003141219.1 4407545..4408987(+) (sbcB) [Pseudomonas aeruginosa strain PSE6684]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRGEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=396726 HPT07_RS20785 WP_003141219.1 4407545..4408987(+) (sbcB) [Pseudomonas aeruginosa strain PSE6684]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGATGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTTCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTCATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGGCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGTTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGCTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.412

88.542

0.438