Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VVMO6_RS02845 Genome accession   NC_014965
Coordinates   574094..574612 (+) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus MO6-24/O     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 569094..579612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVMO6_RS02835 (VVM_00997) gshA 571835..573400 (+) 1566 WP_013571136.1 glutamate--cysteine ligase -
  VVMO6_RS02840 (VVM_01000) - 573438..574043 (+) 606 WP_223370886.1 hypothetical protein -
  VVMO6_RS02845 (VVM_01002) luxS 574094..574612 (+) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  VVMO6_RS02850 (VVM_01004) - 574702..575979 (-) 1278 WP_011079538.1 HlyC/CorC family transporter -
  VVMO6_RS02855 (VVM_01006) - 576066..576860 (-) 795 WP_011079539.1 inner membrane protein YpjD -
  VVMO6_RS02860 (VVM_01007) ffh 577074..578450 (+) 1377 WP_011079540.1 signal recognition particle protein -
  VVMO6_RS02865 (VVM_01010) rpsP 578725..578973 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  VVMO6_RS02870 (VVM_01011) rimM 578989..579537 (+) 549 WP_011079542.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=39671 VVMO6_RS02845 WP_011079537.1 574094..574612(+) (luxS) [Vibrio vulnificus MO6-24/O]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=39671 VVMO6_RS02845 WP_011079537.1 574094..574612(+) (luxS) [Vibrio vulnificus MO6-24/O]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGTACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAACGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment