Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   HPT07_RS13550 Genome accession   NZ_CP053917
Coordinates   2833638..2834663 (-) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain PSE6684     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2828638..2839663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT07_RS13525 (HPT07_13525) aroE 2828840..2829664 (-) 825 WP_003097314.1 shikimate dehydrogenase -
  HPT07_RS13530 (HPT07_13530) hemF 2829722..2830639 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  HPT07_RS13535 (HPT07_13535) - 2830830..2831807 (+) 978 WP_033938270.1 NADPH:quinone reductase -
  HPT07_RS13540 (HPT07_13540) - 2831817..2832374 (-) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  HPT07_RS13545 (HPT07_13545) dprA 2832415..2833503 (-) 1089 WP_033989019.1 DNA-processing protein DprA Machinery gene
  HPT07_RS13550 (HPT07_13550) tsaP 2833638..2834663 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  HPT07_RS13555 (HPT07_13555) def 2834802..2835308 (+) 507 WP_003107059.1 peptide deformylase -
  HPT07_RS13560 (HPT07_13560) fmt 2835363..2836307 (+) 945 WP_031756537.1 methionyl-tRNA formyltransferase -
  HPT07_RS13565 (HPT07_13565) rsmB 2836304..2837608 (+) 1305 WP_023092224.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  HPT07_RS13570 (HPT07_13570) trkA 2837635..2839008 (+) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  HPT07_RS13575 (HPT07_13575) - 2839156..2839473 (+) 318 WP_003097288.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=396686 HPT07_RS13550 WP_003097294.1 2833638..2834663(-) (tsaP) [Pseudomonas aeruginosa strain PSE6684]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=396686 HPT07_RS13550 WP_003097294.1 2833638..2834663(-) (tsaP) [Pseudomonas aeruginosa strain PSE6684]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393