Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   HQ616_RS06380 Genome accession   NZ_CP053891
Coordinates   1234819..1235301 (-) Length   160 a.a.
NCBI ID   WP_000163512.1    Uniprot ID   Q8DZB3
Organism   Streptococcus agalactiae strain GBS20     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1229819..1240301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ616_RS06360 (HQ616_06325) alsS 1230078..1231760 (-) 1683 WP_000140344.1 acetolactate synthase AlsS -
  HQ616_RS06365 (HQ616_06330) - 1231870..1233096 (-) 1227 WP_000934868.1 hypothetical protein -
  HQ616_RS06370 (HQ616_06335) - 1233086..1234276 (-) 1191 WP_001081534.1 AI-2E family transporter -
  HQ616_RS06375 (HQ616_06340) - 1234368..1234829 (-) 462 WP_000796053.1 NUDIX hydrolase -
  HQ616_RS06380 (HQ616_06345) mutX 1234819..1235301 (-) 483 WP_000163512.1 8-oxo-dGTP diphosphatase Machinery gene
  HQ616_RS06385 (HQ616_06350) hylB 1235519..1238737 (+) 3219 WP_000403414.1 hyaluronate lyase -
  HQ616_RS06390 (HQ616_06355) rfbB 1238789..1239835 (-) 1047 WP_000134275.1 dTDP-glucose 4,6-dehydratase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18837.23 Da        Isoelectric Point: 4.5116

>NTDB_id=396605 HQ616_RS06380 WP_000163512.1 1234819..1235301(-) (mutX) [Streptococcus agalactiae strain GBS20]
MTKLATICYIDNGKELLLLHRNKKENDVHEGKWISVGGKLEAGETPDECAKREILEETHLTVKKMDFKGVITFPEFTPGH
DWYTYVFKVTDYEGELISDDESREGTLEWVPYDQVLSKPTWQGDYEIFKWILEDVPFFSAKFVYDEHQNLIEKTVNFYEK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=396605 HQ616_RS06380 WP_000163512.1 1234819..1235301(-) (mutX) [Streptococcus agalactiae strain GBS20]
ATGACTAAATTAGCAACAATTTGTTACATTGACAATGGCAAGGAATTACTTCTATTGCACCGCAACAAAAAAGAGAATGA
TGTTCATGAGGGAAAGTGGATCTCGGTAGGCGGTAAACTGGAGGCAGGTGAAACTCCTGATGAATGTGCTAAGCGTGAAA
TTCTAGAAGAAACCCATTTAACAGTAAAAAAAATGGATTTTAAAGGAGTCATCACTTTTCCTGAATTTACGCCAGGTCAT
GATTGGTATACCTATGTCTTTAAAGTAACAGATTATGAAGGAGAGTTAATTTCAGATGATGAATCACGAGAAGGAACTTT
AGAATGGGTACCATATGATCAAGTTCTCTCTAAGCCAACGTGGCAAGGAGATTACGAAATTTTTAAATGGATTTTAGAAG
ATGTTCCTTTCTTTTCTGCTAAGTTTGTTTATGATGAACACCAAAATTTAATTGAAAAGACGGTTAATTTTTATGAAAAA
TAG

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DZB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.698

99.375

0.712