Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   HQ616_RS05250 Genome accession   NZ_CP053891
Coordinates   1011168..1012238 (-) Length   356 a.a.
NCBI ID   WP_000817933.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1006168..1017238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ616_RS05230 (HQ616_05205) - 1006703..1007455 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  HQ616_RS05235 (HQ616_05210) - 1007457..1009412 (+) 1956 WP_000499553.1 FtsX-like permease family protein -
  HQ616_RS05240 (HQ616_05215) braR 1009522..1010190 (+) 669 WP_000076874.1 response regulator transcription factor Regulator
  HQ616_RS05245 (HQ616_05220) - 1010187..1011125 (+) 939 WP_000620981.1 HAMP domain-containing sensor histidine kinase -
  HQ616_RS05250 (HQ616_05225) xerS 1011168..1012238 (-) 1071 WP_000817933.1 tyrosine recombinase XerS Machinery gene
  HQ616_RS05255 (HQ616_05230) - 1012691..1014354 (+) 1664 Protein_960 peptide ABC transporter substrate-binding protein -
  HQ616_RS05260 (HQ616_05235) - 1014387..1015160 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  HQ616_RS05265 (HQ616_05240) - 1015150..1015836 (-) 687 WP_000280308.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41360.56 Da        Isoelectric Point: 9.4625

>NTDB_id=396597 HQ616_RS05250 WP_000817933.1 1011168..1012238(-) (xerS) [Streptococcus agalactiae strain GBS20]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYINCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=396597 HQ616_RS05250 WP_000817933.1 1011168..1012238(-) (xerS) [Streptococcus agalactiae strain GBS20]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACACTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAAATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCTCTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTAGAGAAAATGGTTGCTA
AGTATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAACTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(184-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834