Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   STH8232_RS06740 Genome accession   NC_017581
Coordinates   1298311..1298991 (-) Length   226 a.a.
NCBI ID   WP_011681349.1    Uniprot ID   -
Organism   Streptococcus thermophilus JIM 8232     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1293311..1303991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STH8232_RS06720 (STH8232_1548) - 1293862..1294356 (-) 495 WP_014621752.1 YkgJ family cysteine cluster protein -
  STH8232_RS06725 (STH8232_1549) - 1294441..1296441 (-) 2001 WP_014621753.1 ABC transporter permease -
  STH8232_RS06730 (STH8232_1550) - 1296443..1297201 (-) 759 WP_014608483.1 ABC transporter ATP-binding protein -
  STH8232_RS06735 (STH8232_1551) - 1297346..1298321 (-) 976 Protein_1243 sensor histidine kinase -
  STH8232_RS06740 (STH8232_1552) braR 1298311..1298991 (-) 681 WP_011681349.1 response regulator transcription factor Regulator
  STH8232_RS06745 (STH8232_1554) - 1299442..1300022 (+) 581 Protein_1245 xanthine phosphoribosyltransferase -
  STH8232_RS06750 (STH8232_1555) - 1300022..1301293 (+) 1272 Protein_1246 nucleobase:cation symporter-2 family protein -
  STH8232_RS06755 (STH8232_1557) - 1301421..1302770 (+) 1350 WP_014621757.1 MATE family efflux transporter -

Sequence


Protein


Download         Length: 226 a.a.        Molecular weight: 26206.51 Da        Isoelectric Point: 4.8038

>NTDB_id=39658 STH8232_RS06740 WP_011681349.1 1298311..1298991(-) (braR) [Streptococcus thermophilus JIM 8232]
MHKILLVEDDEVIRQQVKKILEQWEYEVVLVEDFMEVLSLFVKEEPHLVLMDIGLPLFNGYHWCQEIRKVSKVPIMFLSS
RDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQSLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQIL
QVLFERSGNIVSREDLMKELWNSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGLRHDG

Nucleotide


Download         Length: 681 bp        

>NTDB_id=39658 STH8232_RS06740 WP_011681349.1 1298311..1298991(-) (braR) [Streptococcus thermophilus JIM 8232]
ATGCATAAGATTTTATTAGTTGAGGACGACGAGGTTATCCGTCAACAAGTCAAGAAAATACTAGAACAGTGGGAGTACGA
AGTTGTTCTTGTTGAAGATTTCATGGAAGTATTATCTCTTTTTGTAAAAGAAGAACCCCACTTGGTTCTTATGGATATTG
GTTTACCTCTATTCAACGGTTATCACTGGTGTCAGGAAATTCGGAAGGTCTCCAAGGTGCCTATTATGTTCTTGTCTTCC
AGAGATCAGGCCATGGATATCGTTATGGCAATCAATATGGGTGGGGACGACTTTGTGACTAAACCCTTTGACCAAAATGT
TCTCTTGGCAAAAATTCAAGGGCTTTTGCGCCGATCTTATGAGTTTGGAAAGGATCAGAGTCTTTTGGAATATATGGGTG
TGATTCTGAACCTTAAGGCCATGGATCTGGTTTATCAGGGAGAAGTCGTTTCTTTGACTAAGAATGAATTTCAGATTTTA
CAAGTTCTCTTTGAGCGTTCTGGTAATATCGTTAGTCGTGAAGACCTCATGAAGGAGCTTTGGAATAGTGACTTCTTTAT
TGATGATAACACTCTCTCTGTAAATGTGGCACGTTTACGTAAGAAGTTAGAGGCAGTTGGTTTGAAGGACTTTATTGAAA
CCAAGAAAGGTGTCGGTTACGGGTTGCGTCATGATGGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

51.835

96.46

0.5


Multiple sequence alignment