Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GH761_RS11810 Genome accession   NZ_CP045743
Coordinates   2323113..2324918 (+) Length   601 a.a.
NCBI ID   WP_153648657.1    Uniprot ID   -
Organism   Listeria innocua strain CFSAN044836     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2318113..2329918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH761_RS11785 (GH761_11785) - 2318167..2319243 (+) 1077 WP_003722316.1 ABC transporter ATP-binding protein -
  GH761_RS11790 (GH761_11790) - 2319240..2320208 (+) 969 WP_003763514.1 ABC transporter ATP-binding protein -
  GH761_RS11795 (GH761_11795) spxA 2320528..2320923 (+) 396 WP_003720569.1 transcriptional regulator SpxA -
  GH761_RS11800 (GH761_11800) mecA 2321145..2321798 (+) 654 WP_003763512.1 adaptor protein MecA -
  GH761_RS11805 (GH761_11805) - 2321925..2323040 (+) 1116 WP_010991116.1 competence protein CoiA -
  GH761_RS11810 (GH761_11810) pepF 2323113..2324918 (+) 1806 WP_153648657.1 oligoendopeptidase F Regulator
  GH761_RS11815 (GH761_11815) - 2325230..2325496 (+) 267 WP_010991114.1 DUF3116 family protein -
  GH761_RS11820 (GH761_11820) isdC 2325712..2326338 (+) 627 WP_153648658.1 heme uptake protein IsdC -
  GH761_RS11825 (GH761_11825) - 2326351..2328072 (+) 1722 WP_153648659.1 NEAT domain-containing protein -
  GH761_RS11830 (GH761_11830) isdE 2328159..2329031 (+) 873 WP_153648660.1 heme ABC transporter substrate-binding protein IsdE -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68551.69 Da        Isoelectric Point: 4.6563

>NTDB_id=396562 GH761_RS11810 WP_153648657.1 2323113..2324918(+) (pepF) [Listeria innocua strain CFSAN044836]
MSKTNALPLREEVPENLTWDLTTIYPNDEAWEKAFTELQKITEESDQFKGRLAESSQTLYEALQFRDKAYDLISNLYVYA
HLKMDQDTANAKYQGLHSRAGSLVTKLMSALSYYDPEILAMDESALKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEEIEITHGRYGKLLESNDPRVRKDAFLGVYSVYEGLKNTLASTLNG
QVKKSNFYASTRGYKSAREAALSGNHIPETVYDSLLKSVNNNASLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFT
YEEAKEIVLEALKPLGDEYQSILKEAFDSRWIDVMENKGKRSGAYSSGSYSTNPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQEGV
ALTADYLTETYFDINKKYYGDAIVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAG
SSDYPIDVLKKAGVDMATPNSVDDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=396562 GH761_RS11810 WP_153648657.1 2323113..2324918(+) (pepF) [Listeria innocua strain CFSAN044836]
TTGAGTAAAACGAATGCATTACCTTTAAGAGAAGAAGTTCCAGAAAATTTAACTTGGGATTTGACTACTATTTATCCAAA
TGATGAGGCTTGGGAAAAAGCCTTTACAGAATTACAAAAAATCACAGAAGAAAGCGATCAATTTAAAGGTCGTCTAGCGG
AAAGTAGCCAAACGCTTTATGAAGCATTACAATTTCGTGATAAAGCTTATGATTTAATTAGTAATTTATATGTATATGCT
CATTTGAAAATGGACCAGGATACAGCTAATGCGAAATACCAAGGATTACATAGTCGGGCAGGAAGTTTAGTTACAAAACT
AATGTCTGCATTATCTTATTATGATCCTGAAATTTTAGCGATGGATGAGAGTGCTTTAAAACAATTTTTAAATGAAAATA
AAGATTTGCAACTATATGCACACTTATTAGAGGAATTAAACTTAAGCCGACCTTATATTTTAAGTGAAAAAGAAGAGGCA
TTATTAGCGAATGCTGGCGAAGTTTTGGGTAGTTCTTCTAATACGTTTAACACATTAAATAATGCGGACATGAAGTTCCC
TACAATTAAAGATGAAAATGGCGAAGAGATTGAAATCACGCATGGTCGTTATGGTAAGTTGTTAGAAAGTAATGACCCGC
GTGTTCGTAAAGACGCGTTTCTTGGTGTGTATTCTGTTTATGAAGGATTAAAGAATACCTTAGCATCTACTTTAAACGGG
CAAGTGAAAAAATCTAATTTTTATGCTTCTACACGTGGATATAAGTCCGCTCGTGAGGCAGCACTTTCAGGAAATCATAT
TCCGGAGACAGTTTATGACTCTTTATTAAAATCAGTAAACAATAATGCTAGTTTACTTCATCGCTATGTAAAATTACGTA
AAGAATTGCTTGGATTAGAAGAACTTCATATGTATGATCTTTATACACCGCTTTCTGATGATGTTAATTTGGAATTCACT
TATGAGGAAGCAAAAGAGATTGTCCTTGAAGCCTTGAAGCCACTTGGGGATGAATATCAATCGATTTTAAAAGAAGCTTT
TGATAGCCGCTGGATTGATGTGATGGAAAATAAAGGTAAACGAAGCGGGGCATACTCTTCTGGTTCATATAGTACAAATC
CATATATTTTATTGAATTGGCAAGATAATATTAATAATGTTTATACGCTAGCTCATGAACTTGGACATAGTGTTCACAGT
TACTATACAAGGAAGAATCAACCATTTGTTTATGGAGATTATTCGATTTTCTTAGCAGAAGTTGCTTCTACGACTAATGA
AAATTTACTGACGGACTATCTTTTGAAAAAATATGATGATCCGAAAGTACGCGCTTATTTGTTAAATCATTATTTAGATG
GATTTAAAGGAACTGTATTCCGTCAAACGCAATTTGCTGAGTTTGAGCATGCTATTCATCAAGCAGATCAAGAAGGAGTT
GCTTTAACAGCTGATTATTTAACAGAAACTTACTTTGATATTAATAAGAAATATTATGGTGATGCAATTGTTTATGATGC
TGAAATTGGTTATGAATGGTCTCGTATTCCACATTTTTACATGAACTATTATGTTTTCCAATATGCGACTGGGTTTTCGG
CAGCATCAGCTTTAAGTGCGAAAATTTTAACTGAAGGTCAAGAGGCGGTAACAGCTTATATTGACTTTTTGAAAGCAGGA
AGTTCTGATTATCCAATTGATGTGTTGAAAAAAGCAGGAGTTGATATGGCAACACCGAACTCTGTGGATGACGCTTTAAA
AGTTTTTGAACAAAGATTAGATGAATTAGAAAAACTAGTCAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-586)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.182

98.502

0.504

Multiple sequence alignment