Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VVMO6_RS00195 Genome accession   NC_014965
Coordinates   40274..41377 (+) Length   367 a.a.
NCBI ID   WP_013570888.1    Uniprot ID   -
Organism   Vibrio vulnificus MO6-24/O     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 35274..46377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVMO6_RS00175 (VVM_00075) rsmB 36183..37463 (-) 1281 WP_011151424.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  VVMO6_RS00180 (VVM_00078) fmt 37547..38494 (-) 948 WP_011151423.1 methionyl-tRNA formyltransferase -
  VVMO6_RS00185 (VVM_00079) def 38526..39038 (-) 513 WP_013570887.1 peptide deformylase -
  VVMO6_RS00190 (VVM_00081) - 39177..40274 (+) 1098 WP_011079082.1 LysM peptidoglycan-binding domain-containing protein -
  VVMO6_RS00195 (VVM_00084) dprA 40274..41377 (+) 1104 WP_013570888.1 DNA-processing protein DprA Machinery gene
  VVMO6_RS00200 (VVM_00085) - 41380..41859 (+) 480 WP_011079084.1 DUF494 family protein -
  VVMO6_RS00205 (VVM_00086) - 41883..42452 (+) 570 WP_013570889.1 type I DNA topoisomerase -
  VVMO6_RS00210 (VVM_00088) - 42517..43650 (-) 1134 WP_013570890.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VVMO6_RS00215 (VVM_00089) purE 43654..44139 (-) 486 WP_011079087.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VVMO6_RS00220 (VVM_00090) - 44320..44877 (+) 558 WP_013570891.1 L-threonylcarbamoyladenylate synthase -
  VVMO6_RS00225 (VVM_00093) hemF 44906..45823 (+) 918 WP_011079089.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39549.02 Da        Isoelectric Point: 6.7801

>NTDB_id=39655 VVMO6_RS00195 WP_013570888.1 40274..41377(+) (dprA) [Vibrio vulnificus MO6-24/O]
MSQDELHAWLALSFTPNIGVKKLTKLLSIDSPLNILRYSQEQLLSLGLSSQQIITLRSSAQQDAEAALQWQQLSSQHHIL
TLHDGLYPPLLKETASPPCQLFVQGDPHCLTKPQIALVGSRHATMQGLQHARDFAAQLVQHGLVVTSGLALGIDGHAHDG
ALTAGGETVAVLGSGFQHIYPARHKGLAERIGQQGALVSEFRPNTKAKAEHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQGREVFALPNSLHITNARGGNLLIKSGACLVTGVEDVLSEVQTLLDWSTNQQADLFSSSNTEEQLPFPQLLANV
GNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVNGGYIRRGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=39655 VVMO6_RS00195 WP_013570888.1 40274..41377(+) (dprA) [Vibrio vulnificus MO6-24/O]
ATGAGTCAAGATGAACTGCATGCTTGGTTAGCACTCAGTTTTACGCCCAATATTGGGGTTAAGAAGCTAACCAAGTTACT
CAGTATTGATTCCCCGCTCAATATTCTGCGTTATTCCCAAGAGCAGCTACTGTCGCTGGGGCTGTCGTCCCAGCAAATCA
TCACCTTGCGAAGTAGTGCTCAGCAAGACGCTGAAGCCGCCCTTCAATGGCAGCAGCTTTCCTCCCAGCATCATATTCTT
ACCCTTCATGATGGCCTATATCCGCCGCTGCTTAAGGAAACGGCTTCACCGCCTTGCCAACTGTTTGTACAGGGTGATCC
TCATTGCTTAACCAAGCCACAAATTGCGCTGGTGGGGAGTCGTCATGCGACCATGCAAGGGTTGCAACATGCCCGCGACT
TTGCGGCTCAACTGGTACAGCATGGGTTGGTGGTGACCAGTGGTTTAGCGCTTGGGATTGATGGCCATGCCCATGATGGT
GCGCTGACAGCGGGAGGCGAAACCGTTGCCGTTCTTGGTTCGGGCTTTCAACATATTTATCCCGCTCGCCACAAAGGCCT
TGCCGAGAGAATTGGTCAGCAAGGTGCGCTGGTTTCGGAGTTTCGTCCCAATACGAAAGCCAAAGCCGAACACTTTCCTC
GTCGAAATCGAATCATTAGTGGCTTGTCTCTGGGGGTTTTAGTGGTCGAAGCGGCAGAGAAAAGTGGTTCTTTGATTACA
GCCCGTTATGCCGCTGAGCAAGGCCGAGAAGTCTTTGCTTTGCCTAACTCTCTCCATATTACCAACGCACGTGGCGGAAA
CTTGCTGATAAAAAGCGGAGCGTGTTTGGTCACTGGGGTTGAAGATGTGCTGAGTGAAGTGCAAACCTTGCTCGACTGGT
CGACAAACCAACAAGCGGATTTATTTTCTTCCTCTAATACGGAAGAACAATTGCCATTTCCTCAGCTGTTAGCTAACGTA
GGTAATGAGGCTACACCAGTTGATATTCTAGCAAACAGGACCAATATACCTGTGCAAGAAGTCATGATGCAGCTCTTGGA
GCTTGAGCTTTCAGGGCATGTTGTTGCAGTTAACGGTGGCTATATTCGAAGGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(315-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

69.697

98.91

0.689
  dprA Vibrio cholerae strain A1552

58.76

100

0.594
  dprA Glaesserella parasuis strain SC1401

45.283

100

0.458
  dprA Legionella pneumophila strain ERS1305867

44.598

98.365

0.439
  dprA Haemophilus influenzae Rd KW20

41.444

100

0.422
  dprA Neisseria meningitidis MC58

37.783

100

0.409
  dprA Neisseria meningitidis strain C311

37.783

100

0.409
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.401
  dprA Neisseria gonorrhoeae MS11

36.962

100

0.398
  dprA Acinetobacter baylyi ADP1

38.235

100

0.39
  dprA Acinetobacter baumannii D1279779

41.692

90.191

0.376
  dprA Acinetobacter baumannii strain A118

41.088

90.191

0.371

Multiple sequence alignment