Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GH761_RS07265 Genome accession   NZ_CP045743
Coordinates   1443048..1444421 (-) Length   457 a.a.
NCBI ID   WP_003760072.1    Uniprot ID   Q92F42
Organism   Listeria innocua strain CFSAN044836     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1438048..1449421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH761_RS07240 (GH761_07240) epsC 1438150..1438764 (-) 615 WP_003760085.1 serine O-acetyltransferase EpsC -
  GH761_RS07245 (GH761_07245) gltX 1439163..1440638 (-) 1476 WP_153648456.1 glutamate--tRNA ligase -
  GH761_RS07250 (GH761_07250) ispF 1440657..1441130 (-) 474 WP_003760080.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GH761_RS07255 (GH761_07255) ispD 1441123..1441821 (-) 699 WP_153648457.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GH761_RS07260 (GH761_07260) - 1441841..1442914 (-) 1074 WP_045553277.1 PIN/TRAM domain-containing protein -
  GH761_RS07265 (GH761_07265) radA 1443048..1444421 (-) 1374 WP_003760072.1 DNA repair protein RadA Machinery gene
  GH761_RS07270 (GH761_07270) - 1444576..1447038 (-) 2463 WP_003770116.1 ATP-dependent Clp protease ATP-binding subunit -
  GH761_RS07275 (GH761_07275) - 1447067..1448089 (-) 1023 WP_010990301.1 protein arginine kinase -
  GH761_RS07280 (GH761_07280) - 1448086..1448604 (-) 519 WP_003765052.1 UvrB/UvrC motif-containing protein -
  GH761_RS07285 (GH761_07285) - 1448617..1449075 (-) 459 WP_003760062.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49935.52 Da        Isoelectric Point: 7.3272

>NTDB_id=396543 GH761_RS07265 WP_003760072.1 1443048..1444421(-) (radA) [Listeria innocua strain CFSAN044836]
MAKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASEEEARVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKVPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=396543 GH761_RS07265 WP_003760072.1 1443048..1444421(-) (radA) [Listeria innocua strain CFSAN044836]
ATGGCTAAGGCAAAAAGGACGACCAAATTTGTGTGTCAGTCATGTGGGTATGAATCGGCAAAATGGATGGGTAAATGTCC
GAATTGCAATGAGTGGAATCAGATGGTAGAGGCATTAGAGCCATCGAAAAAATCACGCTCAGCTTTTAATCATACAGGAG
AACCATCAAAGGCGACTCCAATAACTCAAATTGCAAGTGAAGAAGAAGCTCGGGTAGAAACTAATATGCCTGAATTAAAT
AGAGTGCTTGGTGGCGGAGTTGTTCCGGGATCTATGGTACTTGTTGGTGGCGATCCTGGTATTGGTAAATCCACGCTTTT
ACTACAAGTGTCGGCACAACTTACACTTACTAATAAGAAAGTATTATATATTTCCGGGGAAGAATCAATTAAGCAAACAA
AACTTCGTGCGGAGCGGCTGCAAGTTTCCGGTGATAATTTGTATGTTTATGCAGAAACTAATTTAGAAGCGGTTCAAGAA
ACAATCGACTTTGTAAAACCAGATTTTGTTGTCATTGACTCTATTCAAACTGTTTATCACCCTGATGTCACGAGTGCTGC
GGGAAGTGTATCACAGGTTCGAGAATGTACGGCTGCTTTAATGCGGATCGCTAAAATGCAAAATATTGCTATTTTCATCG
TTGGTCATGTGACGAAAGAAGGCGCGATTGCTGGACCGCGTTTACTTGAACATATGGTAGATACAGTGCTTTATTTTGAA
GGAGAACGTCATCATGCTTATCGAATTTTACGCGCAGTAAAAAACCGTTTTGGCTCGACAAATGAAATGGGGATATTTGA
GATGCGTGATATTGGTCTTGTGGAAGTTGCCAATCCATCTGAGGTGTTCTTAGAGGAACGTCTAGAAGGAGCTTCGGGAT
CAACAGTTGTAGCTTCGATGGAAGGGACTCGTCCTGTGCTTGTAGAGATTCAAGCACTTGTATCGCCAACCATGTTTGGG
AATGCAAAACGGATGGCAACTGGAATTGATTATAATAAAGTTTCTTTGATTATGGCTGTTTTAGAAAAAAGAGTAGGTTT
AATGTTACAAAATCAAGATGCTTATTTGAAGGCAGCTGGTGGAGTTAAATTGGATGAACCAGCAGTTGATTTGGCGGTAG
CTGTTAGTGTGGCTTCTAGTTATCGTGATAAACCGACAAGAAGTACGGATTGTTTTATTGGAGAACTTGGTCTAACTGGT
GAGATTCGCCGTGTTGCAAGAATTGAACAACGCGTACAAGAAGCTGCCAAACTAGGCTTCAAACGAATTTTTATCCCTAA
AAATAATGAAGGCACTTGGAAAGTACCAAAAGACGTGCAAGTGGTTGGCGTAGAAACGATTGGAGAAGCGTTGAAGAAGG
CTTTACCAGATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q92F42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.86

99.781

0.687
  radA Streptococcus mitis NCTC 12261

65.495

99.562

0.652
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643

Multiple sequence alignment