Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GHR40_RS19220 Genome accession   NZ_CP045741
Coordinates   3957497..3958126 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain DH5alpha     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3952497..3963126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHR40_RS19205 (GHR40_19205) helD 3952739..3954793 (-) 2055 WP_001295354.1 DNA helicase IV -
  GHR40_RS19210 (GHR40_19210) yccF 3954916..3955362 (+) 447 WP_001261235.1 YccF domain-containing protein -
  GHR40_RS19215 (GHR40_19215) yccS 3955372..3957534 (+) 2163 WP_000875061.1 YccS family putative transporter -
  GHR40_RS19220 (GHR40_19220) sxy/tfoX 3957497..3958126 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GHR40_RS19225 (GHR40_19225) sulA 3958345..3958854 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  GHR40_RS19230 (GHR40_19230) ompA 3959211..3960251 (+) 1041 WP_000750416.1 porin OmpA -
  GHR40_RS19235 (GHR40_19235) matP 3960327..3960779 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GHR40_RS19240 (GHR40_19240) ycbZ 3960965..3962725 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=396522 GHR40_RS19220 WP_000839153.1 3957497..3958126(-) (sxy/tfoX) [Escherichia coli strain DH5alpha]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=396522 GHR40_RS19220 WP_000839153.1 3957497..3958126(-) (sxy/tfoX) [Escherichia coli strain DH5alpha]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment