Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GH742_RS05805 Genome accession   NZ_CP045732
Coordinates   1233695..1234021 (+) Length   108 a.a.
NCBI ID   WP_203456499.1    Uniprot ID   -
Organism   Legionella sp. MW5194     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1228695..1239021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH742_RS05785 (GH742_05765) - 1228814..1230262 (+) 1449 WP_203456495.1 cation:proton antiporter -
  GH742_RS05790 (GH742_05770) nadC 1230259..1231101 (+) 843 WP_203456496.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GH742_RS05795 (GH742_05775) - 1231098..1232189 (+) 1092 WP_203456497.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  GH742_RS05800 (GH742_05780) - 1232164..1233588 (+) 1425 WP_203456498.1 M20 family metallopeptidase -
  GH742_RS05805 (GH742_05785) comEA 1233695..1234021 (+) 327 WP_203456499.1 helix-hairpin-helix domain-containing protein Machinery gene
  GH742_RS05810 (GH742_05790) - 1234085..1234381 (+) 297 WP_203456501.1 GIY-YIG nuclease family protein -
  GH742_RS05815 - 1234423..1234611 (+) 189 WP_203456502.1 hypothetical protein -
  GH742_RS05820 (GH742_05795) - 1235181..1236218 (+) 1038 WP_058527717.1 rod shape-determining protein -
  GH742_RS05825 (GH742_05800) mreC 1236196..1237104 (+) 909 WP_108293689.1 rod shape-determining protein MreC -
  GH742_RS05830 (GH742_05805) mreD 1237101..1237583 (+) 483 WP_203456503.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11831.56 Da        Isoelectric Point: 6.7264

>NTDB_id=396433 GH742_RS05805 WP_203456499.1 1233695..1234021(+) (comEA) [Legionella sp. MW5194]
MKANLIAVVLSFLSMSFHLYASPTPLGTPATAQEAETATPKINLNTAELKTLIHSFKGIGQKRAEAIVKYRESHDGFKSV
EELAEVPGLGQQFINRNLAELKETFSVE

Nucleotide


Download         Length: 327 bp        

>NTDB_id=396433 GH742_RS05805 WP_203456499.1 1233695..1234021(+) (comEA) [Legionella sp. MW5194]
ATGAAAGCAAATCTGATTGCTGTTGTACTGTCATTTTTATCAATGTCGTTCCATTTATACGCATCACCCACACCCCTCGG
CACGCCCGCGACCGCGCAGGAAGCAGAAACAGCCACTCCTAAAATCAATCTGAATACCGCTGAATTAAAAACCCTGATTC
ATTCGTTTAAAGGAATTGGTCAAAAACGGGCTGAAGCCATTGTTAAATACCGGGAAAGCCATGATGGATTTAAATCCGTT
GAAGAATTGGCGGAAGTTCCGGGTTTGGGACAACAATTCATCAACAGGAATCTCGCTGAACTTAAGGAAACCTTTAGCGT
AGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(39-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

54.206

99.074

0.537
  comEA Legionella pneumophila strain ERS1305867

54.206

99.074

0.537

Multiple sequence alignment