Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   HQ614_RS06440 Genome accession   NZ_CP053889
Coordinates   1251892..1254090 (-) Length   732 a.a.
NCBI ID   WP_000622227.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SS43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1246892..1259090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ614_RS06420 (HQ614_06395) - 1246950..1247633 (-) 684 WP_000365677.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  HQ614_RS06425 (HQ614_06400) - 1247737..1248417 (-) 681 WP_000221657.1 DnaD domain-containing protein -
  HQ614_RS06430 (HQ614_06405) - 1248535..1249053 (-) 519 WP_000365343.1 adenine phosphoribosyltransferase -
  HQ614_RS06435 (HQ614_06410) - 1249176..1251740 (-) 2565 WP_001247509.1 GBS Bsp-like repeat-containing protein -
  HQ614_RS06440 (HQ614_06415) recJ 1251892..1254090 (-) 2199 WP_000622227.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  HQ614_RS06445 (HQ614_06420) - 1254087..1254848 (-) 762 WP_000124587.1 SDR family oxidoreductase -
  HQ614_RS06450 (HQ614_06425) rnz 1254850..1255779 (-) 930 WP_000405388.1 ribonuclease Z -
  HQ614_RS06455 (HQ614_06430) - 1255821..1256468 (-) 648 WP_000568324.1 cystathionine beta-lyase -
  HQ614_RS06460 (HQ614_06435) hflX 1256461..1257699 (-) 1239 WP_000573351.1 GTPase HflX -
  HQ614_RS06465 (HQ614_06440) miaA 1257790..1258680 (-) 891 WP_001226486.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  HQ614_RS06470 (HQ614_06445) - 1258791..1258967 (+) 177 WP_000239229.1 DUF3042 family protein -

Sequence

Protein


Download         Length: 732 a.a.        Molecular weight: 82279.93 Da        Isoelectric Point: 4.5370

>NTDB_id=396392 HQ614_RS06440 WP_000622227.1 1251892..1254090(-) (recJ) [Streptococcus agalactiae strain SS43]
MISAKYSWVLNNQKPDAGFFEASKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLHDPYLLNDMDKAVNRIRRAIEN
NETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDGYGPNESVYKYFIEQQDVSLIITVDNGVAGHEAIAYAQ
NQGVDVVVTDHHSMPADLPCAYAIIHPEHPDANYPFPYLAGCGVAFKVACALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLDDPNPAIELLTGFDDEESQAIAQMIDQKN
EERKEIVQTIFDQAMQMLDQTKPVQVLAKENWHPGVLGIVAGRILERTGQPVIVLNIEDGIAKGSARSVEALDIFQAFDQ
HRELFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDTVRDFEKLAPFGMDNKKP
VFLLKDFKVSQARVMGQNSAHLKLKLEQDGQALDLVAFNMGSQLQEFQQAQHLELAVTLSVNQWNGATTLQLMLEDARVD
GIQLFDIRSKASSLPHGVPILSQEEQSKEVILLTVPDHPQELKQMTQGKQFDAIYFKNEIPKNYFISGYGTRDQFASLYK
TIYQFPEFDVRYKLKELSSYLHIPDILLIKMIQIFEELHFVTITEGIMTVNKEAEKRDISESQIYQELKETVKFQELMAL
GTPKEIYDFMMS

Nucleotide


Download         Length: 2199 bp        

>NTDB_id=396392 HQ614_RS06440 WP_000622227.1 1251892..1254090(-) (recJ) [Streptococcus agalactiae strain SS43]
ATGATATCTGCTAAGTATAGTTGGGTCCTCAATAACCAAAAGCCAGACGCTGGCTTTTTTGAGGCTTCAAAAAAAGAAAA
GATAAGTGAAGCGGTGGCTTCCTTAATTTATTCGCGAGGTATTAAGACATCAGCGGAATTACATCATTTTTTACAAACTA
ATTTGGAAAATCTCCATGATCCTTATTTGTTAAATGATATGGATAAAGCTGTTAATCGTATTAGACGAGCTATTGAAAAT
AATGAAACTATTTTAGTTTATGGAGACTATGATGCTGATGGAATGACATCAGCATCAATCATGAAAGAAGCTTTAGATAT
GATGGGAGCTGAAGTCCAGGTTTATCTCCCAAATCGTTTTACAGATGGTTACGGTCCCAATGAAAGTGTTTATAAATATT
TTATTGAACAACAAGATGTTTCATTAATCATTACGGTTGATAATGGTGTGGCAGGGCATGAAGCAATTGCATATGCTCAA
AATCAAGGTGTGGACGTGGTAGTTACTGATCATCACAGTATGCCAGCAGATTTACCTTGTGCTTATGCTATTATTCACCC
AGAACATCCTGATGCTAATTATCCATTTCCTTATTTAGCAGGGTGTGGTGTTGCTTTTAAAGTAGCTTGTGCTCTCTTAG
AAACAATCCCGACAGAAATGTTGGATTTGGTTGCTATTGGGACGATTGCAGATATGGTTAGCCTAACTGATGAAAATCGT
ATCATGGTAAAAGCTGGACTTGAAGTTATGAAAGATAGTGAAAGAATAGGCTTACAGGAGCTAATATCTTTATCAAATAT
TGATTTAAAAACACTAAATGAAGAAACTATTGGATTTAAAATTGCTCCACAATTAAACGCTTTAGGAAGACTCGATGACC
CTAATCCAGCTATTGAATTACTGACAGGGTTTGATGATGAAGAATCTCAAGCAATAGCCCAAATGATTGATCAAAAAAAT
GAAGAGCGCAAAGAAATCGTTCAAACTATCTTTGACCAAGCTATGCAAATGCTTGATCAAACAAAGCCTGTACAAGTTTT
AGCAAAAGAAAATTGGCATCCAGGGGTTTTAGGTATTGTGGCGGGTCGTATTTTAGAGAGAACTGGACAACCTGTTATTG
TTTTGAATATTGAAGATGGTATTGCTAAAGGAAGTGCCAGAAGTGTAGAAGCACTTGATATTTTTCAAGCTTTTGACCAG
CATCGAGAATTATTCATTGCTTTTGGAGGTCACAGCGGAGCAGCAGGCATGACTTTAGAGGAAAGTAAGGTGGGTGATCT
TTCTCAAGTTTTATGTGACTATATCTCTAAAAAACAATTGGACATGAGTCAGAAAAAAACTCTGACAATTGATAGTGAGC
TACGTTTTGACGAACTTAGTTTAGACACTGTTAGAGATTTTGAAAAGTTAGCGCCATTTGGAATGGATAATAAAAAGCCA
GTCTTTTTGTTAAAAGATTTTAAAGTGAGTCAAGCTAGAGTCATGGGGCAAAACAGTGCTCATCTGAAATTAAAACTAGA
ACAAGATGGACAAGCACTTGATTTGGTAGCATTTAATATGGGGAGTCAACTACAAGAGTTCCAACAAGCACAACATTTGG
AGTTAGCTGTCACTTTATCTGTTAATCAATGGAATGGTGCCACAACCCTACAATTAATGTTGGAGGATGCGCGTGTAGAC
GGTATTCAATTATTTGATATTAGAAGCAAAGCAAGTAGCTTACCTCATGGAGTGCCAATCCTATCTCAAGAAGAGCAGAG
CAAAGAAGTTATTCTTTTGACTGTTCCCGATCATCCACAAGAATTAAAACAAATGACTCAAGGTAAACAGTTTGATGCCA
TCTATTTTAAAAATGAGATACCAAAAAATTATTTTATATCTGGTTATGGTACACGTGATCAGTTTGCTAGTTTATATAAA
ACAATATATCAATTCCCAGAATTTGACGTTCGTTATAAGTTAAAAGAGCTCAGTTCCTACCTTCATATCCCTGATATTTT
ATTAATTAAAATGATTCAAATTTTTGAAGAACTACATTTTGTTACGATTACAGAAGGGATTATGACAGTCAATAAAGAAG
CAGAAAAGCGAGATATCTCTGAGAGTCAAATTTATCAAGAATTAAAAGAGACAGTTAAGTTTCAAGAATTAATGGCTTTA
GGGACACCTAAAGAAATATATGATTTTATGATGAGTTGA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-433)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-726)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(450-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

64.993

100

0.654
  recJ Bacillus subtilis subsp. subtilis str. 168

36.01

100

0.38