Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GDY38_RS01705 | Genome accession | NZ_CP045724 |
| Coordinates | 343100..343552 (-) | Length | 150 a.a. |
| NCBI ID | WP_012340854.1 | Uniprot ID | W0R5B1 |
| Organism | Pasteurella multocida strain PM22 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 325616..342564 | 343100..343552 | flank | 536 |
Gene organization within MGE regions
Location: 325616..343552
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GDY38_RS01595 (GDY38_01595) | - | 325616..326323 (+) | 708 | WP_228487878.1 | hypothetical protein | - |
| GDY38_RS01600 (GDY38_01600) | - | 326862..327629 (-) | 768 | WP_012340839.1 | aldo/keto reductase | - |
| GDY38_RS01605 (GDY38_01605) | - | 327580..327948 (+) | 369 | WP_308700758.1 | DUF6803 family protein | - |
| GDY38_RS01610 (GDY38_01610) | - | 328130..328585 (+) | 456 | WP_005612095.1 | DUF411 domain-containing protein | - |
| GDY38_RS01615 (GDY38_01615) | - | 328598..330145 (+) | 1548 | WP_006248871.1 | multicopper oxidase family protein | - |
| GDY38_RS01620 (GDY38_01620) | - | 330235..330369 (-) | 135 | WP_015587091.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| GDY38_RS01625 (GDY38_01625) | - | 330479..330658 (+) | 180 | WP_006248870.1 | hypothetical protein | - |
| GDY38_RS01630 (GDY38_01630) | - | 330707..331225 (+) | 519 | WP_006248869.1 | hypothetical protein | - |
| GDY38_RS01635 (GDY38_01635) | tetR(H) | 331228..331851 (-) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| GDY38_RS01640 (GDY38_01640) | aadB | 332038..332571 (+) | 534 | WP_000381802.1 | aminoglycoside nucleotidyltransferase ANT(2'')-Ia | - |
| GDY38_RS01645 (GDY38_01645) | - | 332629..333497 (+) | 869 | Protein_308 | AadA family aminoglycoside 3''-O-nucleotidyltransferase | - |
| GDY38_RS01650 (GDY38_01650) | - | 333497..334324 (+) | 828 | WP_001007673.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | - |
| GDY38_RS01655 (GDY38_01655) | - | 334415..335119 (+) | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| GDY38_RS01660 (GDY38_01660) | msr(E) | 335482..336957 (+) | 1476 | WP_000052512.1 | ABC-F type ribosomal protection protein Msr(E) | - |
| GDY38_RS01665 (GDY38_01665) | - | 337013..337897 (+) | 885 | WP_014325835.1 | Mph(E) family macrolide 2'-phosphotransferase | - |
| GDY38_RS01670 (GDY38_01670) | - | 337981..338685 (+) | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| GDY38_RS01675 (GDY38_01675) | - | 338691..338936 (+) | 246 | WP_025329032.1 | hypothetical protein | - |
| GDY38_RS01680 (GDY38_01680) | tetR(H) | 338939..339562 (-) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| GDY38_RS01685 (GDY38_01685) | tet(H) | 339654..340856 (+) | 1203 | WP_014325836.1 | tetracycline efflux MFS transporter Tet(H) | - |
| GDY38_RS01690 (GDY38_01690) | - | 340952..342262 (-) | 1311 | WP_011200814.1 | ISL3 family transposase | - |
| GDY38_RS01695 (GDY38_01695) | - | 342262..342564 (-) | 303 | WP_011200813.1 | hypothetical protein | - |
| GDY38_RS01700 (GDY38_01700) | - | 342605..342793 (-) | 189 | WP_011200812.1 | hypothetical protein | - |
| GDY38_RS01705 (GDY38_01705) | ssb | 343100..343552 (-) | 453 | WP_012340854.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17204.13 Da Isoelectric Point: 5.2733
>NTDB_id=396360 GDY38_RS01705 WP_012340854.1 343100..343552(-) (ssb) [Pasteurella multocida strain PM22]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=396360 GDY38_RS01705 WP_012340854.1 343100..343552(-) (ssb) [Pasteurella multocida strain PM22]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.333 |
100 |
0.76 |
| ssb | Vibrio cholerae strain A1552 |
51.724 |
100 |
0.6 |
| ssb | Neisseria gonorrhoeae MS11 |
45.665 |
100 |
0.527 |
| ssb | Neisseria meningitidis MC58 |
45.087 |
100 |
0.52 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
31.818 |
100 |
0.373 |