Detailed information NTG0396324

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GG844_RS16625
• Genome accession: NZ_CP045719
• Coordinates: 2399952..2400959 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae O395 substr. TCP2
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2394952..2405959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GG844_RS16600 (GG844_16600)	rraA	2395527..2396042 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
GG844_RS16605 (GG844_16605)	-	2396117..2397034 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GG844_RS16610 (GG844_16610)	hslU	2397138..2398469 (-)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
GG844_RS16615 (GG844_16615)	hslV	2398535..2399092 (-)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
GG844_RS16620 (GG844_16620)	-	2399229..2399780 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
GG844_RS16625 (GG844_16625)	cytR	2399952..2400959 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
GG844_RS16630 (GG844_16630)	priA	2401265..2403469 (-)	2205	WP_001247858.1	primosomal protein N'	-
GG844_RS16635 (GG844_16635)	rpmE	2403724..2403942 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
GG844_RS16640 (GG844_16640)	-	2404250..2405527 (+)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
GG844_RS16645 (GG844_16645)	metJ	2405638..2405955 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=396324 GG844_RS16625 WP_000224452.1 2399952..2400959(-) (cytR) [Vibrio cholerae O395 substr. TCP2]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=396324 GG844_RS16625 WP_000224452.1 2399952..2400959(-) (cytR) [Vibrio cholerae O395 substr. TCP2]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904