Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   HQ615_RS06850 Genome accession   NZ_CP053888
Coordinates   1347018..1347458 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain SS44     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1342018..1352458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ615_RS06835 (HQ615_06805) - 1342676..1343302 (-) 627 WP_000449636.1 GTP pyrophosphokinase family protein -
  HQ615_RS06840 (HQ615_06810) rcrQ 1343410..1345164 (-) 1755 WP_000851081.1 ABC transporter ATP-binding protein Regulator
  HQ615_RS06845 (HQ615_06815) rcrP 1345154..1346971 (-) 1818 WP_000481821.1 ABC transporter ATP-binding protein Regulator
  HQ615_RS06850 (HQ615_06820) rcrR 1347018..1347458 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  HQ615_RS06855 (HQ615_06825) - 1347727..1349799 (+) 2073 WP_000726914.1 bifunctional metallophosphatase/5'-nucleotidase -
  HQ615_RS06860 (HQ615_06830) - 1349836..1350246 (-) 411 WP_000594936.1 peptide deformylase -
  HQ615_RS06865 (HQ615_06835) gdhA 1350316..1351665 (-) 1350 WP_000200448.1 NADP-specific glutamate dehydrogenase -
  HQ615_RS06870 (HQ615_06840) - 1351833..1352342 (+) 510 WP_000870955.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=396291 HQ615_RS06850 WP_000431168.1 1347018..1347458(-) (rcrR) [Streptococcus agalactiae strain SS44]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=396291 HQ615_RS06850 WP_000431168.1 1347018..1347458(-) (rcrR) [Streptococcus agalactiae strain SS44]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATCTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411

Multiple sequence alignment