Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GHB96_RS01865 Genome accession   NZ_CP045707
Coordinates   359054..360433 (+) Length   459 a.a.
NCBI ID   WP_050170990.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG250     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 354054..365433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHB96_RS01850 (GHB96_01940) - 354639..356528 (-) 1890 WP_050170989.1 Z1 domain-containing protein -
  GHB96_RS01855 (GHB96_01945) - 356529..357566 (-) 1038 WP_003687776.1 restriction endonuclease PLD domain-containing protein -
  GHB96_RS01860 (GHB96_01950) - 357563..358687 (-) 1125 WP_003687777.1 DNA cytosine methyltransferase -
  GHB96_RS01865 (GHB96_01960) radA 359054..360433 (+) 1380 WP_050170990.1 DNA repair protein RadA Machinery gene
  GHB96_RS01870 (GHB96_01965) - 360708..361187 (-) 480 WP_003687780.1 DUF302 domain-containing protein -
  GHB96_RS01875 (GHB96_01970) - 361312..361671 (-) 360 WP_003687781.1 rhodanese-like domain-containing protein -
  GHB96_RS01880 (GHB96_01975) recB 361710..365312 (-) 3603 WP_003687782.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49565.04 Da        Isoelectric Point: 7.3938

>NTDB_id=396148 GHB96_RS01865 WP_050170990.1 359054..360433(+) (radA) [Neisseria gonorrhoeae strain NG250]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESFAAPEPKNARFQSWAADTSTVQSLSAVTAAEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRSQRLELHAEGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMVKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLSVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIHGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=396148 GHB96_RS01865 WP_050170990.1 359054..360433(+) (radA) [Neisseria gonorrhoeae strain NG250]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGTCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCTTTGCCGCGCCCGAGCCGAAAAACGCCCGATTCCAATCTTGGGCGGCGG
ACACTTCGACCGTCCAATCCCTCTCCGCCGTTACCGCTGCCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGCGCGGTCATCCTGCTCGGCGGCGATCCCGGCATCGGCAAATCCACGCTGTT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAAGAATCCGCCCAACAGGTCGCCC
TGCGCTCGCAACGTTTGGAACTGCACGCCGAAGGCGTAAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGGCGGCC
TTGAAACAGCATCAGCCCGAAGTCGTCGTTATCGATTCCATCCAAACCATGTATTCCGACCAAATCACGTCCGCCCCCGG
TTCCGTGTCGCAGGTGCGCGAATGTGCCGCCCAACTGACGCGTATGGTGAAACAAATGGGTATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGAGCGATTGCCGGCCCGCGCGTGCTGGAACATATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGTTTCGGCGCGGCAAACGAATTGGGCGTGTTCGCGAT
GACCGAAAACGGTTTGAAAGGCGTATCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACA
CCCAAACGCCTCAGCGTCGGATTGGAACAAAACCGCCTTGCGATGCTGCTTGCCGTGTTAAACCGGCACGGCGGCATCGC
CTGTTTCGATCAGGATGTTTTTTTAAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTGGTCTTCGGTGAAATCGGCCTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAGCTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCGAACCTGAAAATCCACGGCGTTTCAAGTTTGCAGGAAGCCATCGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.89

99.129

0.495
  radA Streptococcus pneumoniae Rx1

46.903

98.475

0.462
  radA Streptococcus pneumoniae D39

46.903

98.475

0.462
  radA Streptococcus pneumoniae TIGR4

46.903

98.475

0.462
  radA Streptococcus pneumoniae R6

46.903

98.475

0.462
  radA Streptococcus mitis NCTC 12261

46.799

98.693

0.462
  radA Streptococcus mitis SK321

46.785

98.257

0.46

Multiple sequence alignment