Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GHB96_RS00480 Genome accession   NZ_CP045707
Coordinates   102881..103426 (-) Length   181 a.a.
NCBI ID   WP_003687351.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG250     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 97881..108426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHB96_RS00470 (GHB96_00495) - 98887..99399 (-) 513 WP_003687349.1 shikimate kinase -
  GHB96_RS00475 (GHB96_00500) pilQ 100667..102862 (-) 2196 WP_003690569.1 type IV pilus secretin PilQ Machinery gene
  GHB96_RS00480 (GHB96_00505) pilP 102881..103426 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  GHB96_RS00485 (GHB96_00510) pilO 103444..104091 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  GHB96_RS00490 (GHB96_00515) pilN 104092..104691 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  GHB96_RS00495 (GHB96_00520) - 104694..105809 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  GHB96_RS00500 (GHB96_00525) - 105961..108357 (+) 2397 WP_003704910.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.60 Da        Isoelectric Point: 4.7529

>NTDB_id=396140 GHB96_RS00480 WP_003687351.1 102881..103426(-) (pilP) [Neisseria gonorrhoeae strain NG250]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=396140 GHB96_RS00480 WP_003687351.1 102881..103426(-) (pilP) [Neisseria gonorrhoeae strain NG250]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

98.343

100

0.983

Multiple sequence alignment